miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23387 5' -46.4 NC_005259.1 + 54684 0.66 0.995592
Target:  5'- -cGGCgag--CGAGACCGUgucgAgGCGGg -3'
miRNA:   3'- uaCCGauaaaGUUCUGGUAa---UgCGUC- -5'
23387 5' -46.4 NC_005259.1 + 10104 0.66 0.995592
Target:  5'- -aGGCcaccgAgcUCAAGACCGU-GCGCAu -3'
miRNA:   3'- uaCCGa----UaaAGUUCUGGUAaUGCGUc -5'
23387 5' -46.4 NC_005259.1 + 15569 0.66 0.994771
Target:  5'- gGUGGCcacccUCGGGGCCAgcGCGaCGGg -3'
miRNA:   3'- -UACCGauaa-AGUUCUGGUaaUGC-GUC- -5'
23387 5' -46.4 NC_005259.1 + 15158 0.66 0.993829
Target:  5'- gGUGGCcgaggcCGAGGCCAUccucgacACGCAGg -3'
miRNA:   3'- -UACCGauaaa-GUUCUGGUAa------UGCGUC- -5'
23387 5' -46.4 NC_005259.1 + 1327 0.67 0.988626
Target:  5'- cAUGGUcgAUUUCGAGAUCGa-GCGCAa -3'
miRNA:   3'- -UACCGa-UAAAGUUCUGGUaaUGCGUc -5'
23387 5' -46.4 NC_005259.1 + 54319 0.69 0.972063
Target:  5'- -cGGCUAUUUCAccucgGGGCCAUcggGC-CAGc -3'
miRNA:   3'- uaCCGAUAAAGU-----UCUGGUAa--UGcGUC- -5'
23387 5' -46.4 NC_005259.1 + 56065 0.73 0.848343
Target:  5'- gAUGGCg---UCGAGACCGUcgaGCAGa -3'
miRNA:   3'- -UACCGauaaAGUUCUGGUAaugCGUC- -5'
23387 5' -46.4 NC_005259.1 + 29911 0.75 0.778536
Target:  5'- gGUGGCUGcc-CGAGACCAUcgACGCGu -3'
miRNA:   3'- -UACCGAUaaaGUUCUGGUAa-UGCGUc -5'
23387 5' -46.4 NC_005259.1 + 60654 0.75 0.767765
Target:  5'- -cGGUgAUUUCGGGGCCAUgACGCAc -3'
miRNA:   3'- uaCCGaUAAAGUUCUGGUAaUGCGUc -5'
23387 5' -46.4 NC_005259.1 + 19451 0.76 0.71179
Target:  5'- -aGGCUGUcaUCGAGACCGccgUGCGCAu -3'
miRNA:   3'- uaCCGAUAa-AGUUCUGGUa--AUGCGUc -5'
23387 5' -46.4 NC_005259.1 + 55748 0.77 0.665308
Target:  5'- gGUGGUg---UCGAGACCGU-GCGCAGc -3'
miRNA:   3'- -UACCGauaaAGUUCUGGUAaUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.