Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23388 | 5' | -48.4 | NC_005259.1 | + | 36178 | 0.75 | 0.700579 |
Target: 5'- gCCGAGGUCGAgAGccUGCGuacugAUGCCCa -3' miRNA: 3'- -GGUUCUAGUUgUCa-ACGCca---UACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 24509 | 0.73 | 0.796223 |
Target: 5'- aCCAAGGUCGACAGcaUGCaGUAUucgugGCUCg -3' miRNA: 3'- -GGUUCUAGUUGUCa-ACGcCAUA-----CGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 53610 | 0.72 | 0.834552 |
Target: 5'- gUCGGGGUCAGCAGgcgucgaGCGGUGccguUGgCCg -3' miRNA: 3'- -GGUUCUAGUUGUCaa-----CGCCAU----ACgGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 27396 | 0.71 | 0.860974 |
Target: 5'- gCGGuGUCGGCAGcgGCGGcagcucgGUGCCCg -3' miRNA: 3'- gGUUcUAGUUGUCaaCGCCa------UACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 29006 | 0.71 | 0.860974 |
Target: 5'- aCGAGAUCGGCGaaUGCGGUGucUGCg- -3' miRNA: 3'- gGUUCUAGUUGUcaACGCCAU--ACGgg -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 41094 | 0.71 | 0.864331 |
Target: 5'- gUCGuaGUCGGCGGUcgGCGGUaugacgaugucggcgGUGCCCg -3' miRNA: 3'- -GGUucUAGUUGUCAa-CGCCA---------------UACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 45185 | 0.71 | 0.866821 |
Target: 5'- gCCGAGGUCAgcGCGGUgaugacggGCGaGUucgcguugagcccgAUGCCCu -3' miRNA: 3'- -GGUUCUAGU--UGUCAa-------CGC-CA--------------UACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 18599 | 0.71 | 0.885127 |
Target: 5'- cCCGAuGUCuacGACAGUccgcacaGCGGUGUGCCg -3' miRNA: 3'- -GGUUcUAG---UUGUCAa------CGCCAUACGGg -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 9770 | 0.7 | 0.899871 |
Target: 5'- aCGAGAccuggcUCGACuucUGCccGGUGUGCCCg -3' miRNA: 3'- gGUUCU------AGUUGucaACG--CCAUACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 13202 | 0.7 | 0.91348 |
Target: 5'- aCCAAGcaCAGCGGggccaGCGGUggGCCUc -3' miRNA: 3'- -GGUUCuaGUUGUCaa---CGCCAuaCGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 9641 | 0.69 | 0.93721 |
Target: 5'- cCCucGAUCAcCucGUcGuCGGUAUGCCCg -3' miRNA: 3'- -GGuuCUAGUuGu-CAaC-GCCAUACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 49447 | 0.69 | 0.93721 |
Target: 5'- gCCuuGGUCGGCAGc--CGG-AUGCCCa -3' miRNA: 3'- -GGuuCUAGUUGUCaacGCCaUACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 29889 | 0.69 | 0.941907 |
Target: 5'- gUCGAGGUCGGCaagcacaAGggGUGGc-UGCCCg -3' miRNA: 3'- -GGUUCUAGUUG-------UCaaCGCCauACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 14097 | 0.69 | 0.942414 |
Target: 5'- gCGAGGUCGAgGG-UGCGGaaacgcAUGCCa -3' miRNA: 3'- gGUUCUAGUUgUCaACGCCa-----UACGGg -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 14064 | 0.69 | 0.942414 |
Target: 5'- aCGAGAcCAGCAcg-GCGGUG-GCCUa -3' miRNA: 3'- gGUUCUaGUUGUcaaCGCCAUaCGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 984 | 0.69 | 0.951508 |
Target: 5'- aCGAGAcacCGGCAGccgUGUGGUguacgcgauacguAUGCCCu -3' miRNA: 3'- gGUUCUa--GUUGUCa--ACGCCA-------------UACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 55945 | 0.69 | 0.951958 |
Target: 5'- aCCGAGGUUGACccgcugUGCGGacauccccucgAUGCCCu -3' miRNA: 3'- -GGUUCUAGUUGuca---ACGCCa----------UACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 27308 | 0.68 | 0.964181 |
Target: 5'- aCAcGGUCAGCAucGUUGCGcGgguUGCCUc -3' miRNA: 3'- gGUuCUAGUUGU--CAACGC-Cau-ACGGG- -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 8206 | 0.67 | 0.971005 |
Target: 5'- cCCGAugucGggCAACAGcgagcgUGCGGUgGUGCCg -3' miRNA: 3'- -GGUU----CuaGUUGUCa-----ACGCCA-UACGGg -5' |
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23388 | 5' | -48.4 | NC_005259.1 | + | 68788 | 0.67 | 0.974042 |
Target: 5'- --cAGGUCGuacGCcGggGCGGUgucgGUGCCCg -3' miRNA: 3'- gguUCUAGU---UGuCaaCGCCA----UACGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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