Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23389 | 5' | -63 | NC_005259.1 | + | 62824 | 0.66 | 0.435787 |
Target: 5'- cGCCGCuugcCCGCGaggUCGAGCG-CGC-GGu -3' miRNA: 3'- -UGGCGu---GGCGCg--GGCUCGCaGCGaCC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 50697 | 0.66 | 0.435787 |
Target: 5'- cGCUGCucgucgUCGCGCuuGAGCcgggUGCUGGc -3' miRNA: 3'- -UGGCGu-----GGCGCGggCUCGca--GCGACC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 19650 | 0.66 | 0.435787 |
Target: 5'- cACCgGCACCGC-CUCGGGCaGcCGCUa- -3' miRNA: 3'- -UGG-CGUGGCGcGGGCUCG-CaGCGAcc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 37584 | 0.66 | 0.421573 |
Target: 5'- cCCGCGCCGaucuGCaagcugaacgucgggCCGAGC-UCGCUGa -3' miRNA: 3'- uGGCGUGGCg---CG---------------GGCUCGcAGCGACc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 11227 | 0.66 | 0.418063 |
Target: 5'- cGCCGCAguccUCGgGCUCGGGCaUCGCg-- -3' miRNA: 3'- -UGGCGU----GGCgCGGGCUCGcAGCGacc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 45517 | 0.66 | 0.417189 |
Target: 5'- cACCGCGCCGguguuggcCGCCguggcugCGAGCGgguugcUCGCcGGg -3' miRNA: 3'- -UGGCGUGGC--------GCGG-------GCUCGC------AGCGaCC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 43442 | 0.66 | 0.409368 |
Target: 5'- gGCUGCGCuCGaugaGaCCCGAgGUGUCGUUGa -3' miRNA: 3'- -UGGCGUG-GCg---C-GGGCU-CGCAGCGACc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 64006 | 0.66 | 0.409368 |
Target: 5'- gACgGCauaccACCGCGCCCGAggcgcgGCGagGCcGGu -3' miRNA: 3'- -UGgCG-----UGGCGCGGGCU------CGCagCGaCC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 6267 | 0.66 | 0.409368 |
Target: 5'- cACCGcCGCCGCGCCuaccucgugguCGAGUGgUGC-GGu -3' miRNA: 3'- -UGGC-GUGGCGCGG-----------GCUCGCaGCGaCC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 20155 | 0.66 | 0.409368 |
Target: 5'- aGCCGgugcccuggcCACCGCGCCCGccGCcUCgGCUGa -3' miRNA: 3'- -UGGC----------GUGGCGCGGGCu-CGcAG-CGACc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 43293 | 0.66 | 0.408504 |
Target: 5'- cGCCGCcgaCGCGCCCGccugaauGGCuG-CGUUGGc -3' miRNA: 3'- -UGGCGug-GCGCGGGC-------UCG-CaGCGACC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 6441 | 0.66 | 0.400786 |
Target: 5'- uCgGCACCGuCGCgCUGAucggcaGCGUCGCcGGu -3' miRNA: 3'- uGgCGUGGC-GCG-GGCU------CGCAGCGaCC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 46881 | 0.66 | 0.392319 |
Target: 5'- aAUCGCGCCGcCGCCCgcgauGAGCGccCGCcGa -3' miRNA: 3'- -UGGCGUGGC-GCGGG-----CUCGCa-GCGaCc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 66772 | 0.66 | 0.392319 |
Target: 5'- gACCGC-CUGCuGCUCGAaCGUCGCg-- -3' miRNA: 3'- -UGGCGuGGCG-CGGGCUcGCAGCGacc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 30659 | 0.66 | 0.383969 |
Target: 5'- aGCCGCAgCacauCGCCCG-GCGaguaGCUGGc -3' miRNA: 3'- -UGGCGUgGc---GCGGGCuCGCag--CGACC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 4651 | 0.66 | 0.383969 |
Target: 5'- -gCGCACCGCGCCuaCGGGCacgguGUCugcaCUGGc -3' miRNA: 3'- ugGCGUGGCGCGG--GCUCG-----CAGc---GACC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 46943 | 0.67 | 0.375739 |
Target: 5'- cGCCGCGCCGCcgaccGCgUUGAGC-UUGUUGGc -3' miRNA: 3'- -UGGCGUGGCG-----CG-GGCUCGcAGCGACC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 5578 | 0.67 | 0.375739 |
Target: 5'- gACCGUGCCGUGCUgGGaauGCGgagUGCUGu -3' miRNA: 3'- -UGGCGUGGCGCGGgCU---CGCa--GCGACc -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 33549 | 0.67 | 0.375739 |
Target: 5'- gAUCGuCGCCGgucaggaagaacCGCCCGAacuugaccGCGUCGCgGGc -3' miRNA: 3'- -UGGC-GUGGC------------GCGGGCU--------CGCAGCGaCC- -5' |
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23389 | 5' | -63 | NC_005259.1 | + | 2195 | 0.67 | 0.374922 |
Target: 5'- gGCCGCuacggcaagguGCUGCGCaCCGAGCGcccggccUCGCc-- -3' miRNA: 3'- -UGGCG-----------UGGCGCG-GGCUCGC-------AGCGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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