miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23389 5' -63 NC_005259.1 + 62824 0.66 0.435787
Target:  5'- cGCCGCuugcCCGCGaggUCGAGCG-CGC-GGu -3'
miRNA:   3'- -UGGCGu---GGCGCg--GGCUCGCaGCGaCC- -5'
23389 5' -63 NC_005259.1 + 50697 0.66 0.435787
Target:  5'- cGCUGCucgucgUCGCGCuuGAGCcgggUGCUGGc -3'
miRNA:   3'- -UGGCGu-----GGCGCGggCUCGca--GCGACC- -5'
23389 5' -63 NC_005259.1 + 19650 0.66 0.435787
Target:  5'- cACCgGCACCGC-CUCGGGCaGcCGCUa- -3'
miRNA:   3'- -UGG-CGUGGCGcGGGCUCG-CaGCGAcc -5'
23389 5' -63 NC_005259.1 + 37584 0.66 0.421573
Target:  5'- cCCGCGCCGaucuGCaagcugaacgucgggCCGAGC-UCGCUGa -3'
miRNA:   3'- uGGCGUGGCg---CG---------------GGCUCGcAGCGACc -5'
23389 5' -63 NC_005259.1 + 11227 0.66 0.418063
Target:  5'- cGCCGCAguccUCGgGCUCGGGCaUCGCg-- -3'
miRNA:   3'- -UGGCGU----GGCgCGGGCUCGcAGCGacc -5'
23389 5' -63 NC_005259.1 + 45517 0.66 0.417189
Target:  5'- cACCGCGCCGguguuggcCGCCguggcugCGAGCGgguugcUCGCcGGg -3'
miRNA:   3'- -UGGCGUGGC--------GCGG-------GCUCGC------AGCGaCC- -5'
23389 5' -63 NC_005259.1 + 6267 0.66 0.409368
Target:  5'- cACCGcCGCCGCGCCuaccucgugguCGAGUGgUGC-GGu -3'
miRNA:   3'- -UGGC-GUGGCGCGG-----------GCUCGCaGCGaCC- -5'
23389 5' -63 NC_005259.1 + 64006 0.66 0.409368
Target:  5'- gACgGCauaccACCGCGCCCGAggcgcgGCGagGCcGGu -3'
miRNA:   3'- -UGgCG-----UGGCGCGGGCU------CGCagCGaCC- -5'
23389 5' -63 NC_005259.1 + 43442 0.66 0.409368
Target:  5'- gGCUGCGCuCGaugaGaCCCGAgGUGUCGUUGa -3'
miRNA:   3'- -UGGCGUG-GCg---C-GGGCU-CGCAGCGACc -5'
23389 5' -63 NC_005259.1 + 20155 0.66 0.409368
Target:  5'- aGCCGgugcccuggcCACCGCGCCCGccGCcUCgGCUGa -3'
miRNA:   3'- -UGGC----------GUGGCGCGGGCu-CGcAG-CGACc -5'
23389 5' -63 NC_005259.1 + 43293 0.66 0.408504
Target:  5'- cGCCGCcgaCGCGCCCGccugaauGGCuG-CGUUGGc -3'
miRNA:   3'- -UGGCGug-GCGCGGGC-------UCG-CaGCGACC- -5'
23389 5' -63 NC_005259.1 + 6441 0.66 0.400786
Target:  5'- uCgGCACCGuCGCgCUGAucggcaGCGUCGCcGGu -3'
miRNA:   3'- uGgCGUGGC-GCG-GGCU------CGCAGCGaCC- -5'
23389 5' -63 NC_005259.1 + 46881 0.66 0.392319
Target:  5'- aAUCGCGCCGcCGCCCgcgauGAGCGccCGCcGa -3'
miRNA:   3'- -UGGCGUGGC-GCGGG-----CUCGCa-GCGaCc -5'
23389 5' -63 NC_005259.1 + 66772 0.66 0.392319
Target:  5'- gACCGC-CUGCuGCUCGAaCGUCGCg-- -3'
miRNA:   3'- -UGGCGuGGCG-CGGGCUcGCAGCGacc -5'
23389 5' -63 NC_005259.1 + 30659 0.66 0.383969
Target:  5'- aGCCGCAgCacauCGCCCG-GCGaguaGCUGGc -3'
miRNA:   3'- -UGGCGUgGc---GCGGGCuCGCag--CGACC- -5'
23389 5' -63 NC_005259.1 + 4651 0.66 0.383969
Target:  5'- -gCGCACCGCGCCuaCGGGCacgguGUCugcaCUGGc -3'
miRNA:   3'- ugGCGUGGCGCGG--GCUCG-----CAGc---GACC- -5'
23389 5' -63 NC_005259.1 + 5578 0.67 0.375739
Target:  5'- gACCGUGCCGUGCUgGGaauGCGgagUGCUGu -3'
miRNA:   3'- -UGGCGUGGCGCGGgCU---CGCa--GCGACc -5'
23389 5' -63 NC_005259.1 + 46943 0.67 0.375739
Target:  5'- cGCCGCGCCGCcgaccGCgUUGAGC-UUGUUGGc -3'
miRNA:   3'- -UGGCGUGGCG-----CG-GGCUCGcAGCGACC- -5'
23389 5' -63 NC_005259.1 + 33549 0.67 0.375739
Target:  5'- gAUCGuCGCCGgucaggaagaacCGCCCGAacuugaccGCGUCGCgGGc -3'
miRNA:   3'- -UGGC-GUGGC------------GCGGGCU--------CGCAGCGaCC- -5'
23389 5' -63 NC_005259.1 + 2195 0.67 0.374922
Target:  5'- gGCCGCuacggcaagguGCUGCGCaCCGAGCGcccggccUCGCc-- -3'
miRNA:   3'- -UGGCG-----------UGGCGCG-GGCUCGC-------AGCGacc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.