miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23390 3' -59.3 NC_005259.1 + 13809 0.66 0.598418
Target:  5'- cACCGGcgaGCACCAcgugugCGUGAUGaCCGa -3'
miRNA:   3'- cUGGCCag-CGUGGUa-----GCGCUACgGGC- -5'
23390 3' -59.3 NC_005259.1 + 11444 0.66 0.598418
Target:  5'- gGGCCGcUCGCugCcgC-CGGUGCCUa -3'
miRNA:   3'- -CUGGCcAGCGugGuaGcGCUACGGGc -5'
23390 3' -59.3 NC_005259.1 + 16482 0.66 0.598418
Target:  5'- cGCCGucaagggCGCACCcgCGCGcAUGgCCGa -3'
miRNA:   3'- cUGGCca-----GCGUGGuaGCGC-UACgGGC- -5'
23390 3' -59.3 NC_005259.1 + 17890 0.66 0.587974
Target:  5'- gGACCcc-CGCACCGcgCGCcgaugcgugugGAUGCCCGg -3'
miRNA:   3'- -CUGGccaGCGUGGUa-GCG-----------CUACGGGC- -5'
23390 3' -59.3 NC_005259.1 + 9723 0.66 0.587974
Target:  5'- gGGCCGGUCGaGCUcgC-CGAUGuUCCGg -3'
miRNA:   3'- -CUGGCCAGCgUGGuaGcGCUAC-GGGC- -5'
23390 3' -59.3 NC_005259.1 + 39606 0.66 0.577563
Target:  5'- -gUgGGUgGUGCCAUCaGCGAcgguguacgcgcUGCCCGg -3'
miRNA:   3'- cuGgCCAgCGUGGUAG-CGCU------------ACGGGC- -5'
23390 3' -59.3 NC_005259.1 + 14108 0.66 0.574448
Target:  5'- gGugCGGaaaCGCauGCCAUCGCGugcaaguucaacgaGUGCCUGu -3'
miRNA:   3'- -CugGCCa--GCG--UGGUAGCGC--------------UACGGGC- -5'
23390 3' -59.3 NC_005259.1 + 28792 0.66 0.571336
Target:  5'- cGCCGGUCGCuacGCCAUcgacaccacgauccaCGCGAUcaacgGCaCCGc -3'
miRNA:   3'- cUGGCCAGCG---UGGUA---------------GCGCUA-----CG-GGC- -5'
23390 3' -59.3 NC_005259.1 + 16893 0.66 0.567194
Target:  5'- cGAUCGagucGUCGCACCccacccauaGCGGUGCCuCGa -3'
miRNA:   3'- -CUGGC----CAGCGUGGuag------CGCUACGG-GC- -5'
23390 3' -59.3 NC_005259.1 + 41014 0.66 0.567194
Target:  5'- gGGCCGGUC-CACag-UGUGGUGCCg- -3'
miRNA:   3'- -CUGGCCAGcGUGguaGCGCUACGGgc -5'
23390 3' -59.3 NC_005259.1 + 57039 0.66 0.556873
Target:  5'- ---gGGUCGCACuCGUCGUag-GCCCa -3'
miRNA:   3'- cuggCCAGCGUG-GUAGCGcuaCGGGc -5'
23390 3' -59.3 NC_005259.1 + 60813 0.66 0.553787
Target:  5'- aGGCCGGaaaUCGUcggcgaugcuggccACCAUCGCGAgGUCgCGa -3'
miRNA:   3'- -CUGGCC---AGCG--------------UGGUAGCGCUaCGG-GC- -5'
23390 3' -59.3 NC_005259.1 + 32376 0.67 0.536401
Target:  5'- aGGgCGGgcacUGCccGCCGUCGCGAUaGCUCGg -3'
miRNA:   3'- -CUgGCCa---GCG--UGGUAGCGCUA-CGGGC- -5'
23390 3' -59.3 NC_005259.1 + 42137 0.67 0.536401
Target:  5'- aGACCGuacGUCGCGCCcgCGuUGGUGCaCgCGa -3'
miRNA:   3'- -CUGGC---CAGCGUGGuaGC-GCUACG-G-GC- -5'
23390 3' -59.3 NC_005259.1 + 33382 0.67 0.535384
Target:  5'- uACCGGUC-CGCCGagCGCGAcgagccgUGUCCa -3'
miRNA:   3'- cUGGCCAGcGUGGUa-GCGCU-------ACGGGc -5'
23390 3' -59.3 NC_005259.1 + 22881 0.67 0.533352
Target:  5'- uGAUCGGUCGCGCgcugCGUCuGUacgacggcaagcagGAUGCCCu -3'
miRNA:   3'- -CUGGCCAGCGUG----GUAG-CG--------------CUACGGGc -5'
23390 3' -59.3 NC_005259.1 + 63683 0.67 0.526262
Target:  5'- cACCGG-CGCGCCGgggaucUGCGccUGCCCa -3'
miRNA:   3'- cUGGCCaGCGUGGUa-----GCGCu-ACGGGc -5'
23390 3' -59.3 NC_005259.1 + 41089 0.67 0.523235
Target:  5'- aGCCGGUCGUAgucggcggUCggcgguaugacgauGUCgGCGGUGCCCGc -3'
miRNA:   3'- cUGGCCAGCGU--------GG--------------UAG-CGCUACGGGC- -5'
23390 3' -59.3 NC_005259.1 + 40048 0.67 0.516197
Target:  5'- cGCCGGugaUCGgGuCgGUCGCGAUGaCCCa -3'
miRNA:   3'- cUGGCC---AGCgU-GgUAGCGCUAC-GGGc -5'
23390 3' -59.3 NC_005259.1 + 36985 0.67 0.505215
Target:  5'- cGCCGaacGUCGCACCGUucuugccCGCGc-GCCCGc -3'
miRNA:   3'- cUGGC---CAGCGUGGUA-------GCGCuaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.