Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23390 | 5' | -54.7 | NC_005259.1 | + | 13048 | 0.66 | 0.821221 |
Target: 5'- uUCGGCCCGUucugcGCGAUG-GUcgAGGAAc- -3' miRNA: 3'- gAGCCGGGCA-----UGUUGCaCG--UCCUUcg -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 11420 | 0.66 | 0.793155 |
Target: 5'- -gUGGCCgGUGCAACGgggaUGCuuGGGccGCu -3' miRNA: 3'- gaGCCGGgCAUGUUGC----ACG--UCCuuCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 48484 | 0.67 | 0.773611 |
Target: 5'- gUCGGCCUGUuccuCGACGcGCuugaGGGccGCg -3' miRNA: 3'- gAGCCGGGCAu---GUUGCaCG----UCCuuCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 60732 | 0.67 | 0.76362 |
Target: 5'- -cCGGCCCGUGuCGggguccauuuGCaGUGCAGucGGCu -3' miRNA: 3'- gaGCCGGGCAU-GU----------UG-CACGUCcuUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 17600 | 0.67 | 0.76362 |
Target: 5'- cCUCGGCgCG-AUGACGUG-GGGcGGCg -3' miRNA: 3'- -GAGCCGgGCaUGUUGCACgUCCuUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 64808 | 0.67 | 0.753499 |
Target: 5'- cCUCGGCCuCGgcgGCAaugaGCGUGUGGuGAcggacccugcuGGCg -3' miRNA: 3'- -GAGCCGG-GCa--UGU----UGCACGUC-CU-----------UCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 12018 | 0.67 | 0.743257 |
Target: 5'- -gUGGCCuUGUACG--GUGCGGGcGGCa -3' miRNA: 3'- gaGCCGG-GCAUGUugCACGUCCuUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 20538 | 0.67 | 0.732905 |
Target: 5'- -gCuGCCC--GCAGCGUGguGGAucAGCa -3' miRNA: 3'- gaGcCGGGcaUGUUGCACguCCU--UCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 29947 | 0.68 | 0.669116 |
Target: 5'- -gCGGCCCGgucGCGGC-UGguGGGgcgGGCg -3' miRNA: 3'- gaGCCGGGCa--UGUUGcACguCCU---UCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 21908 | 0.68 | 0.669116 |
Target: 5'- aUUGcGCCCGUAcCAGCGcgagGCAGucGAGGCc -3' miRNA: 3'- gAGC-CGGGCAU-GUUGCa---CGUC--CUUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 50428 | 0.69 | 0.658305 |
Target: 5'- -cCGGCUCGgGCAGCGgUGCGGGcucgGGGUc -3' miRNA: 3'- gaGCCGGGCaUGUUGC-ACGUCC----UUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 55304 | 0.69 | 0.658305 |
Target: 5'- uUUGGCCgCGUGCGACGaccacaggGguGGucuuGGCg -3' miRNA: 3'- gAGCCGG-GCAUGUUGCa-------CguCCu---UCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 47900 | 0.69 | 0.657223 |
Target: 5'- gUCGGCUCGUugAGCGccuugaugGCGucgccgaggcccuGGAAGCc -3' miRNA: 3'- gAGCCGGGCAugUUGCa-------CGU-------------CCUUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 22883 | 0.69 | 0.636622 |
Target: 5'- aUCGGUcgcgcgcugcguCUGUACGACGgcaaGCAGGAuGCc -3' miRNA: 3'- gAGCCG------------GGCAUGUUGCa---CGUCCUuCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 25584 | 0.69 | 0.625769 |
Target: 5'- gUCGGCaCCGUuCAuccuCGuUGCGGGcAGCg -3' miRNA: 3'- gAGCCG-GGCAuGUu---GC-ACGUCCuUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 65686 | 0.7 | 0.60842 |
Target: 5'- aCUCGGCCCG-ACgAGCGggccgaGUAGGAcgaggucacgcccaaGGCg -3' miRNA: 3'- -GAGCCGGGCaUG-UUGCa-----CGUCCU---------------UCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 9149 | 0.7 | 0.60409 |
Target: 5'- gCUCGuGCCCGU-CGACGgcaUGCcGGuGGCa -3' miRNA: 3'- -GAGC-CGGGCAuGUUGC---ACGuCCuUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 59139 | 0.71 | 0.539873 |
Target: 5'- gUCGaGCUCG-GCAGCgGUGCcGGGGAGCu -3' miRNA: 3'- gAGC-CGGGCaUGUUG-CACG-UCCUUCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 23647 | 0.71 | 0.529372 |
Target: 5'- uUCGGCCCGccgacgGCGACG-GCuGGAccgccgaccccgAGCa -3' miRNA: 3'- gAGCCGGGCa-----UGUUGCaCGuCCU------------UCG- -5' |
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23390 | 5' | -54.7 | NC_005259.1 | + | 19388 | 0.71 | 0.529372 |
Target: 5'- -cCGGCCCcaacgGCAGCGUcgacccgauGCAGGGAGa -3' miRNA: 3'- gaGCCGGGca---UGUUGCA---------CGUCCUUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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