miRNA display CGI


Results 41 - 60 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23391 5' -57.4 NC_005259.1 + 44228 0.73 0.339622
Target:  5'- uUCGaGCUCGcccgcCGCGCCGCCCGcGCg -3'
miRNA:   3'- -GGCaUGAGCcua--GCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 20523 0.73 0.32426
Target:  5'- cCCGaGCaCGGGU-GCGCUGCCCGcAGCg -3'
miRNA:   3'- -GGCaUGaGCCUAgCGUGGCGGGC-UCG- -5'
23391 5' -57.4 NC_005259.1 + 1432 0.76 0.225534
Target:  5'- gUCGUGCUCGGGcUgGCACUGCUCGcguGCu -3'
miRNA:   3'- -GGCAUGAGCCU-AgCGUGGCGGGCu--CG- -5'
23391 5' -57.4 NC_005259.1 + 10558 0.76 0.214487
Target:  5'- aUGUGCUCGaucaAUCGCGCCGCCuCGAcgGCg -3'
miRNA:   3'- gGCAUGAGCc---UAGCGUGGCGG-GCU--CG- -5'
23391 5' -57.4 NC_005259.1 + 20458 0.79 0.1472
Target:  5'- gCCGgggugGCUCGGAugaccgccgucgaccUCGaCACCGCCCG-GCa -3'
miRNA:   3'- -GGCa----UGAGCCU---------------AGC-GUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 45328 0.71 0.41509
Target:  5'- gCCGaACUgcgUGGccUGCGCCGCCUGGGCc -3'
miRNA:   3'- -GGCaUGA---GCCuaGCGUGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 64421 0.71 0.41509
Target:  5'- gCCGUGag-GGAUCGCcgacgaGCUGCCgGGGCg -3'
miRNA:   3'- -GGCAUgagCCUAGCG------UGGCGGgCUCG- -5'
23391 5' -57.4 NC_005259.1 + 7845 0.68 0.560641
Target:  5'- cCCuUACgggaCGGAcCGCGCCgaccccggugGCCCGAGUg -3'
miRNA:   3'- -GGcAUGa---GCCUaGCGUGG----------CGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 28212 0.68 0.560641
Target:  5'- uCCGUAgaCGG-UCGUGCCGCCaccgucGGCg -3'
miRNA:   3'- -GGCAUgaGCCuAGCGUGGCGGgc----UCG- -5'
23391 5' -57.4 NC_005259.1 + 10822 0.69 0.550368
Target:  5'- aCgGUGCcgaUGGAcaCGCccACCGCCUGAGCa -3'
miRNA:   3'- -GgCAUGa--GCCUa-GCG--UGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 1362 0.69 0.550368
Target:  5'- aCUGggccGCUCGc--CGCGCCGCCCGcgaGGCc -3'
miRNA:   3'- -GGCa---UGAGCcuaGCGUGGCGGGC---UCG- -5'
23391 5' -57.4 NC_005259.1 + 16232 0.69 0.519924
Target:  5'- gCCGaACgcacccCGGugcugCGCACCGaCCGAGCa -3'
miRNA:   3'- -GGCaUGa-----GCCua---GCGUGGCgGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 46573 0.69 0.519924
Target:  5'- gUCGcgGCgUCGac-CGCGCCGCCCGAGg -3'
miRNA:   3'- -GGCa-UG-AGCcuaGCGUGGCGGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 46870 0.7 0.48042
Target:  5'- gUCGagGCUUGaAUCGCGCCGCCgcccgcgaUGAGCg -3'
miRNA:   3'- -GGCa-UGAGCcUAGCGUGGCGG--------GCUCG- -5'
23391 5' -57.4 NC_005259.1 + 46358 0.7 0.48042
Target:  5'- uCUGgGC-CGcGAUgGCACCGCCCG-GCc -3'
miRNA:   3'- -GGCaUGaGC-CUAgCGUGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 26780 0.7 0.48042
Target:  5'- gCCGgugcCUCGGAacaccagCGcCGCCGCCCGguuGGCc -3'
miRNA:   3'- -GGCau--GAGCCUa------GC-GUGGCGGGC---UCG- -5'
23391 5' -57.4 NC_005259.1 + 37239 0.7 0.469811
Target:  5'- cCCGUGC-CGGAuuggcugccgccgUUGCcaggcuugagGCCGCCCG-GCa -3'
miRNA:   3'- -GGCAUGaGCCU-------------AGCG----------UGGCGGGCuCG- -5'
23391 5' -57.4 NC_005259.1 + 26832 0.7 0.461222
Target:  5'- -gGUGC-CGGggCGguCUGCUCGGGCa -3'
miRNA:   3'- ggCAUGaGCCuaGCguGGCGGGCUCG- -5'
23391 5' -57.4 NC_005259.1 + 39206 0.7 0.455542
Target:  5'- uCCGUGCUUGGAUgcccugccacaaCGCAUUgaggcccucgacaagGCCCGAGa -3'
miRNA:   3'- -GGCAUGAGCCUA------------GCGUGG---------------CGGGCUCg -5'
23391 5' -57.4 NC_005259.1 + 12988 0.71 0.418677
Target:  5'- aCCGUggugcucgcguucgcACUCGGcuaCGcCGCCGCCCG-GCc -3'
miRNA:   3'- -GGCA---------------UGAGCCua-GC-GUGGCGGGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.