miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23393 3' -57.4 NC_005259.1 + 17897 0.66 0.714205
Target:  5'- cGCAcCGCGC-GCCGAUGCgUGugGAuGCc -3'
miRNA:   3'- cCGU-GUGCGaCGGCUGUG-GCugCU-CG- -5'
23393 3' -57.4 NC_005259.1 + 64674 0.66 0.714205
Target:  5'- -cCACACcaGCaccGCCG-CGCCGcCGAGCg -3'
miRNA:   3'- ccGUGUG--CGa--CGGCuGUGGCuGCUCG- -5'
23393 3' -57.4 NC_005259.1 + 53641 0.66 0.714205
Target:  5'- uGGCcgcuuccuGCACGUuguacggGCCGAgGCCccacGCGGGCa -3'
miRNA:   3'- -CCG--------UGUGCGa------CGGCUgUGGc---UGCUCG- -5'
23393 3' -57.4 NC_005259.1 + 12282 0.66 0.714205
Target:  5'- uGGaucuCACGCcGCCG-CGCCucgauGCGGGCa -3'
miRNA:   3'- -CCgu--GUGCGaCGGCuGUGGc----UGCUCG- -5'
23393 3' -57.4 NC_005259.1 + 20644 0.66 0.714205
Target:  5'- cGCgACACGUUcGgCGGCACCGGggcCGAGg -3'
miRNA:   3'- cCG-UGUGCGA-CgGCUGUGGCU---GCUCg -5'
23393 3' -57.4 NC_005259.1 + 39415 0.66 0.714205
Target:  5'- --gAgGCGgUGCCgGACACCGucaaugaguCGAGCg -3'
miRNA:   3'- ccgUgUGCgACGG-CUGUGGCu--------GCUCG- -5'
23393 3' -57.4 NC_005259.1 + 63643 0.66 0.714205
Target:  5'- uGGCGa--GCUGCUcgcuggccggGACGCCGGacaccuCGGGCa -3'
miRNA:   3'- -CCGUgugCGACGG----------CUGUGGCU------GCUCG- -5'
23393 3' -57.4 NC_005259.1 + 61973 0.66 0.710081
Target:  5'- cGCGC-CGCUGCCucgaccuugcucuGCACC-AUGGGCa -3'
miRNA:   3'- cCGUGuGCGACGGc------------UGUGGcUGCUCG- -5'
23393 3' -57.4 NC_005259.1 + 4367 0.66 0.708014
Target:  5'- cGGCACGCccgugccCUGCucaucgccaagcaacCGACACCGAacuacgaGGGCc -3'
miRNA:   3'- -CCGUGUGc------GACG---------------GCUGUGGCUg------CUCG- -5'
23393 3' -57.4 NC_005259.1 + 34590 0.66 0.703874
Target:  5'- aGGCAgACGCgcggUGUCGACAUcacucguccgCGAUGuGCc -3'
miRNA:   3'- -CCGUgUGCG----ACGGCUGUG----------GCUGCuCG- -5'
23393 3' -57.4 NC_005259.1 + 44829 0.66 0.703874
Target:  5'- aGCucCACGagauCCGACACCGcgccCGAGCa -3'
miRNA:   3'- cCGu-GUGCgac-GGCUGUGGCu---GCUCG- -5'
23393 3' -57.4 NC_005259.1 + 44732 0.66 0.703874
Target:  5'- cGGCAgCGCGCccucGaCCG-CGCCGAggcucuUGAGCa -3'
miRNA:   3'- -CCGU-GUGCGa---C-GGCuGUGGCU------GCUCG- -5'
23393 3' -57.4 NC_005259.1 + 51580 0.66 0.703874
Target:  5'- cGGCAgcCGgUGCCGACacaGCCGcacgUGAGCc -3'
miRNA:   3'- -CCGUguGCgACGGCUG---UGGCu---GCUCG- -5'
23393 3' -57.4 NC_005259.1 + 25068 0.66 0.701799
Target:  5'- aGGCAagggugGCGCUGCCacCGCCGcugcgcccgcccCGAGCa -3'
miRNA:   3'- -CCGUg-----UGCGACGGcuGUGGCu-----------GCUCG- -5'
23393 3' -57.4 NC_005259.1 + 28744 0.66 0.697643
Target:  5'- gGGuUACGCGCccgagcgugagaucgUcGCCGGUGCCGACGAGg -3'
miRNA:   3'- -CC-GUGUGCG---------------A-CGGCUGUGGCUGCUCg -5'
23393 3' -57.4 NC_005259.1 + 54722 0.66 0.693477
Target:  5'- uGGUACaggacauagccgAgGCUGCCGACAgCGAUcaGGCc -3'
miRNA:   3'- -CCGUG------------UgCGACGGCUGUgGCUGc-UCG- -5'
23393 3' -57.4 NC_005259.1 + 47616 0.66 0.693477
Target:  5'- aGGCugAgGUucuUGUCGuCGCCGA-GGGCa -3'
miRNA:   3'- -CCGugUgCG---ACGGCuGUGGCUgCUCG- -5'
23393 3' -57.4 NC_005259.1 + 24634 0.66 0.693477
Target:  5'- cGGCAUccCGCaccCCGACGacgagacugaCGACGAGCg -3'
miRNA:   3'- -CCGUGu-GCGac-GGCUGUg---------GCUGCUCG- -5'
23393 3' -57.4 NC_005259.1 + 18567 0.66 0.693477
Target:  5'- cGUACGCcGCcGCCGAC-CC--CGAGCa -3'
miRNA:   3'- cCGUGUG-CGaCGGCUGuGGcuGCUCG- -5'
23393 3' -57.4 NC_005259.1 + 39103 0.66 0.693477
Target:  5'- gGGUugAggUGCUGCaaucgcgucaCGACAUCGGUGAGCu -3'
miRNA:   3'- -CCGugU--GCGACG----------GCUGUGGCUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.