miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23394 5' -60.9 NC_005259.1 + 1836 0.66 0.49446
Target:  5'- -cUGCUCGCCgcuGCCgCCGaGGCCGAg -3'
miRNA:   3'- caGCGAGUGGag-CGG-GGUgUCGGCUg -5'
23394 5' -60.9 NC_005259.1 + 44232 0.66 0.49446
Target:  5'- --aGCUCGCC-CGCCgCGCcGCCcGCg -3'
miRNA:   3'- cagCGAGUGGaGCGGgGUGuCGGcUG- -5'
23394 5' -60.9 NC_005259.1 + 36884 0.66 0.485632
Target:  5'- -cCGCgccgacgaCGCCggugagCGCCCCACugacggggauaucguGCCGACg -3'
miRNA:   3'- caGCGa-------GUGGa-----GCGGGGUGu--------------CGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 13404 0.66 0.48368
Target:  5'- uUCGCUCgGCCuuccuggccggggUCGCCgCCGgGGCCGcGCu -3'
miRNA:   3'- cAGCGAG-UGG-------------AGCGG-GGUgUCGGC-UG- -5'
23394 5' -60.9 NC_005259.1 + 14376 0.66 0.474945
Target:  5'- -cCGCUgAUCUCGUCaCCGagcucGCCGACa -3'
miRNA:   3'- caGCGAgUGGAGCGG-GGUgu---CGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 49442 0.66 0.474945
Target:  5'- -gCGC-CGCCUUGgUCgGCAGCCGGa -3'
miRNA:   3'- caGCGaGUGGAGCgGGgUGUCGGCUg -5'
23394 5' -60.9 NC_005259.1 + 35862 0.66 0.465332
Target:  5'- -cCGC-CGCCgCGuCCaCCGCAGCCGcCg -3'
miRNA:   3'- caGCGaGUGGaGC-GG-GGUGUCGGCuG- -5'
23394 5' -60.9 NC_005259.1 + 47811 0.66 0.465332
Target:  5'- aGUCGCgagACCUCGCgggccaCCGCugccGCUGACg -3'
miRNA:   3'- -CAGCGag-UGGAGCGg-----GGUGu---CGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 27489 0.66 0.446416
Target:  5'- uGUgGC-CACC--GCCCCACGcGCCGAg -3'
miRNA:   3'- -CAgCGaGUGGagCGGGGUGU-CGGCUg -5'
23394 5' -60.9 NC_005259.1 + 25091 0.66 0.446416
Target:  5'- -cCGCUgCGCC-CGCCCCGagcaagggcaaGGUCGACc -3'
miRNA:   3'- caGCGA-GUGGaGCGGGGUg----------UCGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 62971 0.66 0.437121
Target:  5'- cGUCGuCUU-CCUCGUCCuCGCGcGUCGACu -3'
miRNA:   3'- -CAGC-GAGuGGAGCGGG-GUGU-CGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 19852 0.66 0.437121
Target:  5'- -gCGCUCggugugGCgCUCGCgCCCGCcgggaucGCCGACg -3'
miRNA:   3'- caGCGAG------UG-GAGCG-GGGUGu------CGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 31030 0.67 0.427937
Target:  5'- aUCGUgccgaUCACCUCGCCgaACGcGUCGACc -3'
miRNA:   3'- cAGCG-----AGUGGAGCGGggUGU-CGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 22928 0.67 0.427937
Target:  5'- -gUGCUCgACCUCGCCgggucaUCGC-GCCGAUg -3'
miRNA:   3'- caGCGAG-UGGAGCGG------GGUGuCGGCUG- -5'
23394 5' -60.9 NC_005259.1 + 3286 0.67 0.427937
Target:  5'- cGUCGC-CGCCUCGCcgguCCCuCGGCgagcgcugcguCGACg -3'
miRNA:   3'- -CAGCGaGUGGAGCG----GGGuGUCG-----------GCUG- -5'
23394 5' -60.9 NC_005259.1 + 38337 0.67 0.418869
Target:  5'- aGUUGCgcgaguagacccUgACCUCGUCCCACccgAGCCGuGCg -3'
miRNA:   3'- -CAGCG------------AgUGGAGCGGGGUG---UCGGC-UG- -5'
23394 5' -60.9 NC_005259.1 + 15301 0.67 0.418869
Target:  5'- -cCGCcgACCUCGCcgCCCACGGUcuCGACg -3'
miRNA:   3'- caGCGagUGGAGCG--GGGUGUCG--GCUG- -5'
23394 5' -60.9 NC_005259.1 + 41138 0.67 0.409918
Target:  5'- cGUCGCgcaGCCUCagGCCCCAUGuGCaCGAg -3'
miRNA:   3'- -CAGCGag-UGGAG--CGGGGUGU-CG-GCUg -5'
23394 5' -60.9 NC_005259.1 + 1368 0.67 0.409918
Target:  5'- -cCGCUCGCCgCGCcgCCCGCgaGGCCcGCg -3'
miRNA:   3'- caGCGAGUGGaGCG--GGGUG--UCGGcUG- -5'
23394 5' -60.9 NC_005259.1 + 3027 0.67 0.409918
Target:  5'- -gCGCUCcaugACCUCaCCCgGCAgaucGCCGACu -3'
miRNA:   3'- caGCGAG----UGGAGcGGGgUGU----CGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.