Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23395 | 3' | -52.9 | NC_005259.1 | + | 45502 | 0.66 | 0.878017 |
Target: 5'- -cUUGGUCGcUGUggccaccgcgcCGGUguUGGCCGCCg- -3' miRNA: 3'- acAACCAGC-AUA-----------GCCA--ACUGGCGGag -5' |
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23395 | 3' | -52.9 | NC_005259.1 | + | 56381 | 0.67 | 0.853863 |
Target: 5'- cGcgGGcCGcGUCGGcUGAUCGUCUCg -3' miRNA: 3'- aCaaCCaGCaUAGCCaACUGGCGGAG- -5' |
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23395 | 3' | -52.9 | NC_005259.1 | + | 58791 | 0.68 | 0.789804 |
Target: 5'- ---cGGUCGaggCGG-UGAUUGCCUCg -3' miRNA: 3'- acaaCCAGCauaGCCaACUGGCGGAG- -5' |
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23395 | 3' | -52.9 | NC_005259.1 | + | 55017 | 0.69 | 0.749361 |
Target: 5'- uUGgcGGUCGUcUCGGcacgGGCUGCCg- -3' miRNA: 3'- -ACaaCCAGCAuAGCCaa--CUGGCGGag -5' |
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23395 | 3' | -52.9 | NC_005259.1 | + | 63201 | 0.7 | 0.674439 |
Target: 5'- ---cGGUCGUG-CGccucGACCGCCUCg -3' miRNA: 3'- acaaCCAGCAUaGCcaa-CUGGCGGAG- -5' |
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23395 | 3' | -52.9 | NC_005259.1 | + | 8660 | 0.7 | 0.672251 |
Target: 5'- --gUGGUCGggcugccacgCGGgcaacggGGCCGCCUCg -3' miRNA: 3'- acaACCAGCaua-------GCCaa-----CUGGCGGAG- -5' |
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23395 | 3' | -52.9 | NC_005259.1 | + | 35942 | 0.73 | 0.501027 |
Target: 5'- aUGUUGGUgGUGUUGGUgaacgUGACCGUg-- -3' miRNA: 3'- -ACAACCAgCAUAGCCA-----ACUGGCGgag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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