miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23395 3' -52.9 NC_005259.1 + 45502 0.66 0.878017
Target:  5'- -cUUGGUCGcUGUggccaccgcgcCGGUguUGGCCGCCg- -3'
miRNA:   3'- acAACCAGC-AUA-----------GCCA--ACUGGCGGag -5'
23395 3' -52.9 NC_005259.1 + 56381 0.67 0.853863
Target:  5'- cGcgGGcCGcGUCGGcUGAUCGUCUCg -3'
miRNA:   3'- aCaaCCaGCaUAGCCaACUGGCGGAG- -5'
23395 3' -52.9 NC_005259.1 + 58791 0.68 0.789804
Target:  5'- ---cGGUCGaggCGG-UGAUUGCCUCg -3'
miRNA:   3'- acaaCCAGCauaGCCaACUGGCGGAG- -5'
23395 3' -52.9 NC_005259.1 + 55017 0.69 0.749361
Target:  5'- uUGgcGGUCGUcUCGGcacgGGCUGCCg- -3'
miRNA:   3'- -ACaaCCAGCAuAGCCaa--CUGGCGGag -5'
23395 3' -52.9 NC_005259.1 + 63201 0.7 0.674439
Target:  5'- ---cGGUCGUG-CGccucGACCGCCUCg -3'
miRNA:   3'- acaaCCAGCAUaGCcaa-CUGGCGGAG- -5'
23395 3' -52.9 NC_005259.1 + 8660 0.7 0.672251
Target:  5'- --gUGGUCGggcugccacgCGGgcaacggGGCCGCCUCg -3'
miRNA:   3'- acaACCAGCaua-------GCCaa-----CUGGCGGAG- -5'
23395 3' -52.9 NC_005259.1 + 35942 0.73 0.501027
Target:  5'- aUGUUGGUgGUGUUGGUgaacgUGACCGUg-- -3'
miRNA:   3'- -ACAACCAgCAUAGCCA-----ACUGGCGgag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.