miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23396 5' -56.8 NC_005259.1 + 44953 0.66 0.701743
Target:  5'- aGCGGGcagUGCgGUcaUCGGGaUGCCGa -3'
miRNA:   3'- aCGCCUcuaACGgCG--AGUCCaACGGC- -5'
23396 5' -56.8 NC_005259.1 + 26826 0.66 0.691113
Target:  5'- gGCGGuGG-UGCCggggcggucuGCUCGGGcaggaUGCCGa -3'
miRNA:   3'- aCGCCuCUaACGG----------CGAGUCCa----ACGGC- -5'
23396 5' -56.8 NC_005259.1 + 67399 0.66 0.691113
Target:  5'- -uCGGGGGUgucacggGCCGacaccaUCGGGgUGCCGg -3'
miRNA:   3'- acGCCUCUAa------CGGCg-----AGUCCaACGGC- -5'
23396 5' -56.8 NC_005259.1 + 11432 0.66 0.669698
Target:  5'- -aCGGGGAUgcuuggGCCGCUCGc--UGCCGc -3'
miRNA:   3'- acGCCUCUAa-----CGGCGAGUccaACGGC- -5'
23396 5' -56.8 NC_005259.1 + 49735 0.66 0.658934
Target:  5'- gGCGGcGAgaGCUGCUCGucagugacGGUcuUGCCGu -3'
miRNA:   3'- aCGCCuCUaaCGGCGAGU--------CCA--ACGGC- -5'
23396 5' -56.8 NC_005259.1 + 2162 0.67 0.637345
Target:  5'- aGCGGcGucgaGCCGC-C-GGUUGCCGa -3'
miRNA:   3'- aCGCCuCuaa-CGGCGaGuCCAACGGC- -5'
23396 5' -56.8 NC_005259.1 + 6067 0.67 0.637345
Target:  5'- cGCGGuGAUcGCCGCcgaaCAGGacGCCc -3'
miRNA:   3'- aCGCCuCUAaCGGCGa---GUCCaaCGGc -5'
23396 5' -56.8 NC_005259.1 + 31191 0.67 0.615737
Target:  5'- gGCGaGGA-UGCCGCcgaagaUCGGGaUGCCGu -3'
miRNA:   3'- aCGCcUCUaACGGCG------AGUCCaACGGC- -5'
23396 5' -56.8 NC_005259.1 + 46532 0.67 0.58345
Target:  5'- gGuCGGGGAUcGCCGagaUCuGGUcGCCGa -3'
miRNA:   3'- aC-GCCUCUAaCGGCg--AGuCCAaCGGC- -5'
23396 5' -56.8 NC_005259.1 + 51644 0.68 0.572755
Target:  5'- aGCGGuaggcgaacGGGUUGCCGCgCGGGcgcGUCGg -3'
miRNA:   3'- aCGCC---------UCUAACGGCGaGUCCaa-CGGC- -5'
23396 5' -56.8 NC_005259.1 + 59155 0.7 0.459675
Target:  5'- gUGcCGGGGA--GCUGCUCAGGgcGCUu -3'
miRNA:   3'- -AC-GCCUCUaaCGGCGAGUCCaaCGGc -5'
23396 5' -56.8 NC_005259.1 + 26016 0.72 0.343073
Target:  5'- aGCGG-GAUgGCCGCaagCGGGUUGgCCa -3'
miRNA:   3'- aCGCCuCUAaCGGCGa--GUCCAAC-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.