miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23397 3' -54.7 NC_005259.1 + 44938 0.66 0.807372
Target:  5'- cGGGUCcaUGGCaCCAGCGggcaGUGCGg -3'
miRNA:   3'- -CCUAGcaACCGgGGUUGCag--CACGUg -5'
23397 3' -54.7 NC_005259.1 + 64237 0.67 0.777615
Target:  5'- gGGGUCGauaGCCgacgggaUCAACGUgGUGCGCg -3'
miRNA:   3'- -CCUAGCaacCGG-------GGUUGCAgCACGUG- -5'
23397 3' -54.7 NC_005259.1 + 63236 0.67 0.73823
Target:  5'- gGGGUCGcUGGUcagaCCCGACG-CGUcGUACc -3'
miRNA:   3'- -CCUAGCaACCG----GGGUUGCaGCA-CGUG- -5'
23397 3' -54.7 NC_005259.1 + 51231 0.67 0.73823
Target:  5'- cGGAUCGUaGGCCCgGuACGUCacgccguUGCGg -3'
miRNA:   3'- -CCUAGCAaCCGGGgU-UGCAGc------ACGUg -5'
23397 3' -54.7 NC_005259.1 + 10713 0.68 0.674789
Target:  5'- cGGGUaGUUGGCCCgCAugAUGUCGgugaucaccGCGCg -3'
miRNA:   3'- -CCUAgCAACCGGG-GU--UGCAGCa--------CGUG- -5'
23397 3' -54.7 NC_005259.1 + 46313 0.69 0.642398
Target:  5'- -cGUUGUUcgcGGCCCCGagggucGCGUCGcGCACc -3'
miRNA:   3'- ccUAGCAA---CCGGGGU------UGCAGCaCGUG- -5'
23397 3' -54.7 NC_005259.1 + 6494 0.69 0.631569
Target:  5'- cGGGUacUGcUGGCCcacaucgaCCGACGcCGUGCGCg -3'
miRNA:   3'- -CCUA--GCaACCGG--------GGUUGCaGCACGUG- -5'
23397 3' -54.7 NC_005259.1 + 7681 0.69 0.620741
Target:  5'- --cUCGUggggUGGCCCguACGUC-UGCACc -3'
miRNA:   3'- ccuAGCA----ACCGGGguUGCAGcACGUG- -5'
23397 3' -54.7 NC_005259.1 + 43610 0.7 0.609923
Target:  5'- uGA-CGaUGGCCCCGAUGaUCG-GCACc -3'
miRNA:   3'- cCUaGCaACCGGGGUUGC-AGCaCGUG- -5'
23397 3' -54.7 NC_005259.1 + 29402 0.71 0.535177
Target:  5'- ---cCGagGGCCUCGGCGagcUCGUGCGCg -3'
miRNA:   3'- ccuaGCaaCCGGGGUUGC---AGCACGUG- -5'
23397 3' -54.7 NC_005259.1 + 50249 0.73 0.418926
Target:  5'- cGGAUCG-UGGCCaacgggcuacucgCUgucgucgguggcgggAACGUCGUGCACg -3'
miRNA:   3'- -CCUAGCaACCGG-------------GG---------------UUGCAGCACGUG- -5'
23397 3' -54.7 NC_005259.1 + 49859 0.76 0.28536
Target:  5'- aGGAUCGUUGGUCaCGACG-CGUuGCGCc -3'
miRNA:   3'- -CCUAGCAACCGGgGUUGCaGCA-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.