miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23398 3' -55 NC_005259.1 + 54010 0.66 0.778325
Target:  5'- cGGGGUccaccAGCGAcGCUCgggcgCGGUGCGGu -3'
miRNA:   3'- cUCCCG-----UUGUU-CGAGaua--GCCGCGCU- -5'
23398 3' -55 NC_005259.1 + 48774 0.66 0.778325
Target:  5'- -cGGGUAACuuAGUUCaUGUCaGGCGgGAa -3'
miRNA:   3'- cuCCCGUUGu-UCGAG-AUAG-CCGCgCU- -5'
23398 3' -55 NC_005259.1 + 10919 0.66 0.778325
Target:  5'- -uGGcuGCGACAAGCUCggcgaacUCGGUGuCGAc -3'
miRNA:   3'- cuCC--CGUUGUUCGAGau-----AGCCGC-GCU- -5'
23398 3' -55 NC_005259.1 + 955 0.66 0.778325
Target:  5'- -cGGGCAGCucgcgcaacGGCUCaa-CGGCGaCGAg -3'
miRNA:   3'- cuCCCGUUGu--------UCGAGauaGCCGC-GCU- -5'
23398 3' -55 NC_005259.1 + 62851 0.66 0.758122
Target:  5'- -cGGuuGACGAGCagcCgcUCGGCGCGAg -3'
miRNA:   3'- cuCCcgUUGUUCGa--GauAGCCGCGCU- -5'
23398 3' -55 NC_005259.1 + 21172 0.66 0.737406
Target:  5'- cGAcGGCAGucGGgUC-AUCGGCGCGAg -3'
miRNA:   3'- -CUcCCGUUguUCgAGaUAGCCGCGCU- -5'
23398 3' -55 NC_005259.1 + 53612 0.67 0.705572
Target:  5'- cGGGGuCAGCAGGCgUCgagCGGUGCc- -3'
miRNA:   3'- cUCCC-GUUGUUCG-AGauaGCCGCGcu -5'
23398 3' -55 NC_005259.1 + 40372 0.68 0.673095
Target:  5'- cGAGGGCAugAGGUcuUCcAUCgacacgGGCGCGu -3'
miRNA:   3'- -CUCCCGUugUUCG--AGaUAG------CCGCGCu -5'
23398 3' -55 NC_005259.1 + 33436 0.68 0.651234
Target:  5'- --cGGCu-CAAGCUCgcUCGGUGUGAc -3'
miRNA:   3'- cucCCGuuGUUCGAGauAGCCGCGCU- -5'
23398 3' -55 NC_005259.1 + 56657 0.68 0.621624
Target:  5'- cGAGGGCAccgcgcgucACGGGCUCguugcgccacccauaCGGCuGCGAg -3'
miRNA:   3'- -CUCCCGU---------UGUUCGAGaua------------GCCG-CGCU- -5'
23398 3' -55 NC_005259.1 + 13435 0.69 0.60738
Target:  5'- cGGGGCcGCGcuaGGCgugaCcGUCGGCGCGGc -3'
miRNA:   3'- cUCCCGuUGU---UCGa---GaUAGCCGCGCU- -5'
23398 3' -55 NC_005259.1 + 29403 0.7 0.542394
Target:  5'- cGAGGGCcucGGCGAGCUCg--UGcGCGCa- -3'
miRNA:   3'- -CUCCCG---UUGUUCGAGauaGC-CGCGcu -5'
23398 3' -55 NC_005259.1 + 32530 0.72 0.420134
Target:  5'- -cGGGCGGCAGGCUugaccuugCUGUUGGCcgccccgGCGAg -3'
miRNA:   3'- cuCCCGUUGUUCGA--------GAUAGCCG-------CGCU- -5'
23398 3' -55 NC_005259.1 + 10334 0.73 0.358286
Target:  5'- --cGGCGACGGGCUCgg-CGGCaGCGGg -3'
miRNA:   3'- cucCCGUUGUUCGAGauaGCCG-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.