miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23398 5' -60.8 NC_005259.1 + 18727 0.65 0.536607
Target:  5'- cGGgCCGCCCggcaucgguaagucGucgguGGugCUCGACaUGGCCUg -3'
miRNA:   3'- -CCgGGCGGG--------------U-----UCugGAGUUG-GCCGGG- -5'
23398 5' -60.8 NC_005259.1 + 2010 0.66 0.533595
Target:  5'- cGGCCaucggguggCGCaCCGGcACCUCAgugcggugggcggucACCGGCaCCg -3'
miRNA:   3'- -CCGG---------GCG-GGUUcUGGAGU---------------UGGCCG-GG- -5'
23398 5' -60.8 NC_005259.1 + 57408 0.66 0.529588
Target:  5'- uGCCCGCUCucAGuCUgcugCuACCGGCUCg -3'
miRNA:   3'- cCGGGCGGGu-UCuGGa---GuUGGCCGGG- -5'
23398 5' -60.8 NC_005259.1 + 20166 0.66 0.529588
Target:  5'- uGGCCaccgCGCCCGccGCCUCGgcugacgagaucGCCGGUUg -3'
miRNA:   3'- -CCGG----GCGGGUucUGGAGU------------UGGCCGGg -5'
23398 5' -60.8 NC_005259.1 + 28142 0.66 0.529588
Target:  5'- aGGCgaugagCUGCCC--GGCCUCGACgCGcuGCCCu -3'
miRNA:   3'- -CCG------GGCGGGuuCUGGAGUUG-GC--CGGG- -5'
23398 5' -60.8 NC_005259.1 + 45931 0.66 0.519621
Target:  5'- aGGCuCUGCCCGugcAGAucCCUCAGCaCGuuGCCg -3'
miRNA:   3'- -CCG-GGCGGGU---UCU--GGAGUUG-GC--CGGg -5'
23398 5' -60.8 NC_005259.1 + 60530 0.66 0.519621
Target:  5'- uGGCCgGgCCGGGACg-CAGCC-GCUCg -3'
miRNA:   3'- -CCGGgCgGGUUCUGgaGUUGGcCGGG- -5'
23398 5' -60.8 NC_005259.1 + 8377 0.66 0.519621
Target:  5'- cGGCCUcgGCaucggCGAGAgCCUCGgcgaGCCGGgCCa -3'
miRNA:   3'- -CCGGG--CGg----GUUCU-GGAGU----UGGCCgGG- -5'
23398 5' -60.8 NC_005259.1 + 67756 0.66 0.519621
Target:  5'- aGG-CCGCCCc-GGCC---ACCGGCCa -3'
miRNA:   3'- -CCgGGCGGGuuCUGGaguUGGCCGGg -5'
23398 5' -60.8 NC_005259.1 + 23180 0.66 0.519621
Target:  5'- -uCCCGCUCAuggaugacgAGAUCguguUCGugUGGCCCa -3'
miRNA:   3'- ccGGGCGGGU---------UCUGG----AGUugGCCGGG- -5'
23398 5' -60.8 NC_005259.1 + 51437 0.66 0.519621
Target:  5'- gGGCggGCCaCGGGGCCUCGcGCCGauagagcuuguuGCCCu -3'
miRNA:   3'- -CCGggCGG-GUUCUGGAGU-UGGC------------CGGG- -5'
23398 5' -60.8 NC_005259.1 + 9546 0.66 0.519621
Target:  5'- cGGagagCUGCCC--GGCCUCGACCGcGUCg -3'
miRNA:   3'- -CCg---GGCGGGuuCUGGAGUUGGC-CGGg -5'
23398 5' -60.8 NC_005259.1 + 30374 0.66 0.509729
Target:  5'- uGCCCgcuGCCCGgcgagaaaccGGGCCUCuACCGuaGCCa -3'
miRNA:   3'- cCGGG---CGGGU----------UCUGGAGuUGGC--CGGg -5'
23398 5' -60.8 NC_005259.1 + 55880 0.66 0.509729
Target:  5'- cGCCuCGCCCc-GACCUCGGgggUCGcGCCg -3'
miRNA:   3'- cCGG-GCGGGuuCUGGAGUU---GGC-CGGg -5'
23398 5' -60.8 NC_005259.1 + 19362 0.66 0.509729
Target:  5'- cGCCgGgaUCAAGGCCcCGcugaucACCGGCCCc -3'
miRNA:   3'- cCGGgCg-GGUUCUGGaGU------UGGCCGGG- -5'
23398 5' -60.8 NC_005259.1 + 3267 0.66 0.503832
Target:  5'- -uCCUGCUCGGGugguuucccgucgccGCCUC-GCCGGUCCc -3'
miRNA:   3'- ccGGGCGGGUUC---------------UGGAGuUGGCCGGG- -5'
23398 5' -60.8 NC_005259.1 + 57793 0.66 0.499917
Target:  5'- cGGagaCGUUgAAGACCUCGACgCcGCCCg -3'
miRNA:   3'- -CCgg-GCGGgUUCUGGAGUUG-GcCGGG- -5'
23398 5' -60.8 NC_005259.1 + 29445 0.66 0.499917
Target:  5'- cGGCCUcaGCCagcguGACCUUGccgcCCGGCUCg -3'
miRNA:   3'- -CCGGG--CGGguu--CUGGAGUu---GGCCGGG- -5'
23398 5' -60.8 NC_005259.1 + 46241 0.66 0.490189
Target:  5'- cGGCugCCGCCUGAGGCacgUCGACCccgagGGUCUg -3'
miRNA:   3'- -CCG--GGCGGGUUCUGg--AGUUGG-----CCGGG- -5'
23398 5' -60.8 NC_005259.1 + 42216 0.66 0.490189
Target:  5'- uGCCCGCCgCGccGCCguccCCGGCCa -3'
miRNA:   3'- cCGGGCGG-GUucUGGaguuGGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.