Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23399 | 3' | -58.8 | NC_005259.1 | + | 56099 | 0.66 | 0.652627 |
Target: 5'- gUCGgGGCCACCGCGuGGCCaccgaaacugugugcGCugcCGGUg -3' miRNA: 3'- -GGCaCUGGUGGCGC-UCGG---------------CGuu-GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 33453 | 0.66 | 0.648461 |
Target: 5'- gUGUGACCcacguGCCGgGugucuggacuGCCGC-ACGGUa -3' miRNA: 3'- gGCACUGG-----UGGCgCu---------CGGCGuUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 39516 | 0.66 | 0.648461 |
Target: 5'- gCCGcUGGCCACCagucCG-GCC-CAACGuGCg -3' miRNA: 3'- -GGC-ACUGGUGGc---GCuCGGcGUUGC-CG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 16453 | 0.66 | 0.648461 |
Target: 5'- aCCGUcGGcaucgguaccCCGCCGCaGAucGCCGuCAAgGGCg -3' miRNA: 3'- -GGCA-CU----------GGUGGCG-CU--CGGC-GUUgCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 12015 | 0.66 | 0.638037 |
Target: 5'- uCgGUGGCCuuguacGgUGCGGGCgGCAAcCGGUa -3' miRNA: 3'- -GgCACUGG------UgGCGCUCGgCGUU-GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 17858 | 0.66 | 0.638037 |
Target: 5'- cCCGUGGUCAgCGauccuuGAGCCGCu-CGGUu -3' miRNA: 3'- -GGCACUGGUgGCg-----CUCGGCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 62138 | 0.66 | 0.638037 |
Target: 5'- aUCGUcucGACCACCuCaGGCCGCAGCa-- -3' miRNA: 3'- -GGCA---CUGGUGGcGcUCGGCGUUGccg -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 66239 | 0.66 | 0.638037 |
Target: 5'- gUCGUGcaGCCAUcgacgcagCGCGGcCCGCGccggGCGGCg -3' miRNA: 3'- -GGCAC--UGGUG--------GCGCUcGGCGU----UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 19948 | 0.66 | 0.638037 |
Target: 5'- gCGUGugCGuCCGCaacGGCgGCu-CGGCg -3' miRNA: 3'- gGCACugGU-GGCGc--UCGgCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 20468 | 0.66 | 0.636994 |
Target: 5'- cUCGgaUGACCGCCGuCGAccucgacaccGCCcggcagcucaucgGCGACGGUg -3' miRNA: 3'- -GGC--ACUGGUGGC-GCU----------CGG-------------CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 55706 | 0.66 | 0.627608 |
Target: 5'- cUCGuUGAUgGCCGCGAGCaccuCGCccuuguUGGCa -3' miRNA: 3'- -GGC-ACUGgUGGCGCUCG----GCGuu----GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 46432 | 0.66 | 0.627608 |
Target: 5'- cCCGUGACgAUgGUGgcaAGCUGCugcuCGGUg -3' miRNA: 3'- -GGCACUGgUGgCGC---UCGGCGuu--GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 64884 | 0.66 | 0.627608 |
Target: 5'- uCCGaguUGAUgaGCCGCGuGaCacgaGCGACGGCg -3' miRNA: 3'- -GGC---ACUGg-UGGCGCuC-Gg---CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 17503 | 0.66 | 0.627608 |
Target: 5'- aCGgcGACCuuGCCGaucCGAGCUcgugggcacacaGCGACGGCg -3' miRNA: 3'- gGCa-CUGG--UGGC---GCUCGG------------CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 1879 | 0.66 | 0.617183 |
Target: 5'- uCCGUaagcaGGCCGCCgagaucgcGCGAGCUGCcgaggaAGCGcGCc -3' miRNA: 3'- -GGCA-----CUGGUGG--------CGCUCGGCG------UUGC-CG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 12530 | 0.66 | 0.617183 |
Target: 5'- cCCGUaGAgCCGa-GCGAGCC-CcACGGCa -3' miRNA: 3'- -GGCA-CU-GGUggCGCUCGGcGuUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 15300 | 0.66 | 0.617183 |
Target: 5'- aCCGccGACCucGCCGCccacGGUCuCGACGGCg -3' miRNA: 3'- -GGCa-CUGG--UGGCGc---UCGGcGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 13829 | 0.66 | 0.617183 |
Target: 5'- gCGUGAUgACCGaCGGGCacauuGCc-CGGCg -3' miRNA: 3'- gGCACUGgUGGC-GCUCGg----CGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 33878 | 0.66 | 0.617183 |
Target: 5'- uCgGUGAgCACaCGCGGGaaccacccgCGCGACGGg -3' miRNA: 3'- -GgCACUgGUG-GCGCUCg--------GCGUUGCCg -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 46512 | 0.66 | 0.617183 |
Target: 5'- gUCGUacGAUC-CCGCGAGCCGgu-CGGg -3' miRNA: 3'- -GGCA--CUGGuGGCGCUCGGCguuGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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