miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 56099 0.66 0.652627
Target:  5'- gUCGgGGCCACCGCGuGGCCaccgaaacugugugcGCugcCGGUg -3'
miRNA:   3'- -GGCaCUGGUGGCGC-UCGG---------------CGuu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 16453 0.66 0.648461
Target:  5'- aCCGUcGGcaucgguaccCCGCCGCaGAucGCCGuCAAgGGCg -3'
miRNA:   3'- -GGCA-CU----------GGUGGCG-CU--CGGC-GUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 33453 0.66 0.648461
Target:  5'- gUGUGACCcacguGCCGgGugucuggacuGCCGC-ACGGUa -3'
miRNA:   3'- gGCACUGG-----UGGCgCu---------CGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 39516 0.66 0.648461
Target:  5'- gCCGcUGGCCACCagucCG-GCC-CAACGuGCg -3'
miRNA:   3'- -GGC-ACUGGUGGc---GCuCGGcGUUGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 17858 0.66 0.638037
Target:  5'- cCCGUGGUCAgCGauccuuGAGCCGCu-CGGUu -3'
miRNA:   3'- -GGCACUGGUgGCg-----CUCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 66239 0.66 0.638037
Target:  5'- gUCGUGcaGCCAUcgacgcagCGCGGcCCGCGccggGCGGCg -3'
miRNA:   3'- -GGCAC--UGGUG--------GCGCUcGGCGU----UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 19948 0.66 0.638037
Target:  5'- gCGUGugCGuCCGCaacGGCgGCu-CGGCg -3'
miRNA:   3'- gGCACugGU-GGCGc--UCGgCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 12015 0.66 0.638037
Target:  5'- uCgGUGGCCuuguacGgUGCGGGCgGCAAcCGGUa -3'
miRNA:   3'- -GgCACUGG------UgGCGCUCGgCGUU-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 62138 0.66 0.638037
Target:  5'- aUCGUcucGACCACCuCaGGCCGCAGCa-- -3'
miRNA:   3'- -GGCA---CUGGUGGcGcUCGGCGUUGccg -5'
23399 3' -58.8 NC_005259.1 + 20468 0.66 0.636994
Target:  5'- cUCGgaUGACCGCCGuCGAccucgacaccGCCcggcagcucaucgGCGACGGUg -3'
miRNA:   3'- -GGC--ACUGGUGGC-GCU----------CGG-------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 46432 0.66 0.627608
Target:  5'- cCCGUGACgAUgGUGgcaAGCUGCugcuCGGUg -3'
miRNA:   3'- -GGCACUGgUGgCGC---UCGGCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 17503 0.66 0.627608
Target:  5'- aCGgcGACCuuGCCGaucCGAGCUcgugggcacacaGCGACGGCg -3'
miRNA:   3'- gGCa-CUGG--UGGC---GCUCGG------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 55706 0.66 0.627608
Target:  5'- cUCGuUGAUgGCCGCGAGCaccuCGCccuuguUGGCa -3'
miRNA:   3'- -GGC-ACUGgUGGCGCUCG----GCGuu----GCCG- -5'
23399 3' -58.8 NC_005259.1 + 64884 0.66 0.627608
Target:  5'- uCCGaguUGAUgaGCCGCGuGaCacgaGCGACGGCg -3'
miRNA:   3'- -GGC---ACUGg-UGGCGCuC-Gg---CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 46512 0.66 0.617183
Target:  5'- gUCGUacGAUC-CCGCGAGCCGgu-CGGg -3'
miRNA:   3'- -GGCA--CUGGuGGCGCUCGGCguuGCCg -5'
23399 3' -58.8 NC_005259.1 + 13829 0.66 0.617183
Target:  5'- gCGUGAUgACCGaCGGGCacauuGCc-CGGCg -3'
miRNA:   3'- gGCACUGgUGGC-GCUCGg----CGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 1879 0.66 0.617183
Target:  5'- uCCGUaagcaGGCCGCCgagaucgcGCGAGCUGCcgaggaAGCGcGCc -3'
miRNA:   3'- -GGCA-----CUGGUGG--------CGCUCGGCG------UUGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 33878 0.66 0.617183
Target:  5'- uCgGUGAgCACaCGCGGGaaccacccgCGCGACGGg -3'
miRNA:   3'- -GgCACUgGUG-GCGCUCg--------GCGUUGCCg -5'
23399 3' -58.8 NC_005259.1 + 15300 0.66 0.617183
Target:  5'- aCCGccGACCucGCCGCccacGGUCuCGACGGCg -3'
miRNA:   3'- -GGCa-CUGG--UGGCGc---UCGGcGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 12530 0.66 0.617183
Target:  5'- cCCGUaGAgCCGa-GCGAGCC-CcACGGCa -3'
miRNA:   3'- -GGCA-CU-GGUggCGCUCGGcGuUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.