Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23399 | 3' | -58.8 | NC_005259.1 | + | 12530 | 0.66 | 0.617183 |
Target: 5'- cCCGUaGAgCCGa-GCGAGCC-CcACGGCa -3' miRNA: 3'- -GGCA-CU-GGUggCGCUCGGcGuUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 23260 | 0.66 | 0.606769 |
Target: 5'- gCgGUGGCCACCaUGAGCaccaagaccgggCGCggUGGUu -3' miRNA: 3'- -GgCACUGGUGGcGCUCG------------GCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 64884 | 0.66 | 0.627608 |
Target: 5'- uCCGaguUGAUgaGCCGCGuGaCacgaGCGACGGCg -3' miRNA: 3'- -GGC---ACUGg-UGGCGCuC-Gg---CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 17858 | 0.66 | 0.638037 |
Target: 5'- cCCGUGGUCAgCGauccuuGAGCCGCu-CGGUu -3' miRNA: 3'- -GGCACUGGUgGCg-----CUCGGCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 47142 | 0.66 | 0.605729 |
Target: 5'- aUCGUgGGCCACaacguGCGcAGCagaucacCGUAGCGGCg -3' miRNA: 3'- -GGCA-CUGGUGg----CGC-UCG-------GCGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 8300 | 0.67 | 0.584974 |
Target: 5'- cCCGcacGGaaaCGCCGCcuugucgGAGCUGCcGACGGCg -3' miRNA: 3'- -GGCa--CUg--GUGGCG-------CUCGGCG-UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 3121 | 0.67 | 0.586009 |
Target: 5'- gCGcGG-CACCGUGGGCaGCgGACGGCa -3' miRNA: 3'- gGCaCUgGUGGCGCUCGgCG-UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 8407 | 0.67 | 0.596375 |
Target: 5'- gCCG-GGCCACCucgcugGCGAGCaUGCGAugcucguugcCGGUg -3' miRNA: 3'- -GGCaCUGGUGG------CGCUCG-GCGUU----------GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 47042 | 0.67 | 0.565387 |
Target: 5'- gCCGggGAUCugCGCGAGCguguuggugaGCGA-GGCg -3' miRNA: 3'- -GGCa-CUGGugGCGCUCGg---------CGUUgCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 20043 | 0.67 | 0.596375 |
Target: 5'- aCCGUcaAgCGCUGCGAuguccGCUGCggUGGCg -3' miRNA: 3'- -GGCAc-UgGUGGCGCU-----CGGCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 30018 | 0.67 | 0.544958 |
Target: 5'- -gGUGACCACC----GCCGgGGCGGUg -3' miRNA: 3'- ggCACUGGUGGcgcuCGGCgUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 53040 | 0.67 | 0.555145 |
Target: 5'- aUCGUGACC-UCGCGGgaaauuGCUGCGugACGGg -3' miRNA: 3'- -GGCACUGGuGGCGCU------CGGCGU--UGCCg -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 38744 | 0.67 | 0.544958 |
Target: 5'- nCgGUGGcCCGCCGCaggccgguGAGCUGCGcgaucauguCGGCg -3' miRNA: 3'- -GgCACU-GGUGGCG--------CUCGGCGUu--------GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 63016 | 0.67 | 0.596375 |
Target: 5'- gCUGUGGgaacUCGaugcCCGCGAGCUgacucgacaGCAGCGGUg -3' miRNA: 3'- -GGCACU----GGU----GGCGCUCGG---------CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 8184 | 0.67 | 0.569497 |
Target: 5'- cCCGUGGCCugccguuuacgcGCCcgaugucgggcaacaGCGAGCgUGCggUGGUg -3' miRNA: 3'- -GGCACUGG------------UGG---------------CGCUCG-GCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 29341 | 0.67 | 0.565387 |
Target: 5'- cCCaUGACCACCacCGAGaCCGCcgucgaGGCa -3' miRNA: 3'- -GGcACUGGUGGc-GCUC-GGCGuug---CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 35961 | 0.67 | 0.574646 |
Target: 5'- aCGUGACCguggucgcugucaACgGCGGGaaaC-CGACGGCg -3' miRNA: 3'- gGCACUGG-------------UGgCGCUCg--GcGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 6668 | 0.67 | 0.586009 |
Target: 5'- uCCGUGACg--CGCGAGCUGCccgcuuccaagAGUGGCg -3' miRNA: 3'- -GGCACUGgugGCGCUCGGCG-----------UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 28222 | 0.67 | 0.586009 |
Target: 5'- gUCGUGccGCCACCGUcGGCgGCGG-GGUg -3' miRNA: 3'- -GGCAC--UGGUGGCGcUCGgCGUUgCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 43710 | 0.67 | 0.544958 |
Target: 5'- aCCGcgcGACCGCauCGAGUCGaUGGCGGCc -3' miRNA: 3'- -GGCa--CUGGUGgcGCUCGGC-GUUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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