miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 23888 0.68 0.485319
Target:  5'- uCCGcuGCCGCC-CGAGCCGCcGCGcccGCc -3'
miRNA:   3'- -GGCacUGGUGGcGCUCGGCGuUGC---CG- -5'
23399 3' -58.8 NC_005259.1 + 4497 0.68 0.485319
Target:  5'- -gGUGaucGCCACCGCgccggGAGUgGCGcugcGCGGCa -3'
miRNA:   3'- ggCAC---UGGUGGCG-----CUCGgCGU----UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 32550 0.68 0.501924
Target:  5'- gCUGuUGGCCGCCccgGCGAGCgCggggauagcguuggGCAGCGGUu -3'
miRNA:   3'- -GGC-ACUGGUGG---CGCUCG-G--------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13735 0.68 0.502909
Target:  5'- gCCGUGAUgGcCCGCGAGauaugccaagaccUCGCcgacgacguguucGACGGCg -3'
miRNA:   3'- -GGCACUGgU-GGCGCUC-------------GGCG-------------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 60268 0.68 0.534833
Target:  5'- --cUGGCCACCaGCGcuGCCG-GGCGGCc -3'
miRNA:   3'- ggcACUGGUGG-CGCu-CGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 12486 0.68 0.484351
Target:  5'- cCCGUaguccagcacucaGGCguaGCCGCuGGGCCGCu-CGGCu -3'
miRNA:   3'- -GGCA-------------CUGg--UGGCG-CUCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 634 0.68 0.534833
Target:  5'- aCCGUGacaacGCCACCGcCGAGgaCGUgcucGAgGGCa -3'
miRNA:   3'- -GGCAC-----UGGUGGC-GCUCg-GCG----UUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 42495 0.68 0.524774
Target:  5'- gCCGUGACCcguCCgGCGguguGGCCaGCAGCcguccGGCc -3'
miRNA:   3'- -GGCACUGGu--GG-CGC----UCGG-CGUUG-----CCG- -5'
23399 3' -58.8 NC_005259.1 + 53257 0.68 0.504881
Target:  5'- aCCGUcGCCGCCGCugucGCCGguGCcGCc -3'
miRNA:   3'- -GGCAcUGGUGGCGcu--CGGCguUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 37239 0.68 0.524774
Target:  5'- cCCGUGccggauuggcuGCCGCCGUugccaggcuuGAgGCCGCc-CGGCa -3'
miRNA:   3'- -GGCAC-----------UGGUGGCG----------CU-CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 6929 0.68 0.524774
Target:  5'- aCCGccGCCGCCuugaggccgaGCucGCCGCcGACGGCa -3'
miRNA:   3'- -GGCacUGGUGG----------CGcuCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8958 0.68 0.513794
Target:  5'- gCCGUGgacgggcACCguGCCGgGAcguaggugccaGCgGCGACGGCa -3'
miRNA:   3'- -GGCAC-------UGG--UGGCgCU-----------CGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 64002 0.68 0.513794
Target:  5'- gCGUGAcggcauaCCACCGCGcccgAGgCGCGGCgaGGCc -3'
miRNA:   3'- gGCACU-------GGUGGCGC----UCgGCGUUG--CCG- -5'
23399 3' -58.8 NC_005259.1 + 25902 0.69 0.475675
Target:  5'- uCCGaggaUGGCCGCC-UGAGCCGCcGCcGCc -3'
miRNA:   3'- -GGC----ACUGGUGGcGCUCGGCGuUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 3325 0.69 0.475675
Target:  5'- aCGUGAgCGCCGgGcAGCUcuGCGugcuCGGCa -3'
miRNA:   3'- gGCACUgGUGGCgC-UCGG--CGUu---GCCG- -5'
23399 3' -58.8 NC_005259.1 + 2007 0.69 0.475675
Target:  5'- aCGcGGCCAUCGgGuGgCGCAcCGGCa -3'
miRNA:   3'- gGCaCUGGUGGCgCuCgGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8861 0.69 0.466127
Target:  5'- gCGUGcCCGCCGCcuGCCGCAcccACGccGCc -3'
miRNA:   3'- gGCACuGGUGGCGcuCGGCGU---UGC--CG- -5'
23399 3' -58.8 NC_005259.1 + 58188 0.69 0.456679
Target:  5'- aCGUcuuGACCGCCGUGGGCUuGC--CGGUg -3'
miRNA:   3'- gGCA---CUGGUGGCGCUCGG-CGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13236 0.69 0.456679
Target:  5'- ---cGGCCACCGUGAggGCCGagcaccCGGCGGUa -3'
miRNA:   3'- ggcaCUGGUGGCGCU--CGGC------GUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 49541 0.69 0.428971
Target:  5'- aCGUGGCCACCucagugcCGGGCUGUucguCGGUc -3'
miRNA:   3'- gGCACUGGUGGc------GCUCGGCGuu--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.