miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 3064 0.69 0.45574
Target:  5'- aCCGUcgacgGGCCgagGCCGacaagaGAGCCGCGcagcgaugagcggGCGGCc -3'
miRNA:   3'- -GGCA-----CUGG---UGGCg-----CUCGGCGU-------------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 51023 0.69 0.438098
Target:  5'- gUCGUG-CUACCGaCGAGCgGCG--GGCa -3'
miRNA:   3'- -GGCACuGGUGGC-GCUCGgCGUugCCG- -5'
23399 3' -58.8 NC_005259.1 + 6116 0.69 0.447334
Target:  5'- gCCGaGGCCGCCgcuacGCGGGCacuGCAACGcGUa -3'
miRNA:   3'- -GGCaCUGGUGG-----CGCUCGg--CGUUGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 19377 0.69 0.447334
Target:  5'- cCCGcUGAUCACCG---GCCcCAACGGCa -3'
miRNA:   3'- -GGC-ACUGGUGGCgcuCGGcGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8861 0.69 0.466127
Target:  5'- gCGUGcCCGCCGCcuGCCGCAcccACGccGCc -3'
miRNA:   3'- gGCACuGGUGGCGcuCGGCGU---UGC--CG- -5'
23399 3' -58.8 NC_005259.1 + 13236 0.69 0.456679
Target:  5'- ---cGGCCACCGUGAggGCCGagcaccCGGCGGUa -3'
miRNA:   3'- ggcaCUGGUGGCGCU--CGGC------GUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 58188 0.69 0.456679
Target:  5'- aCGUcuuGACCGCCGUGGGCUuGC--CGGUg -3'
miRNA:   3'- gGCA---CUGGUGGCGCUCGG-CGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 25418 0.69 0.447334
Target:  5'- aCCGgGACgGCgaggucgaggaaUGCGAGCCGUAugagguCGGCg -3'
miRNA:   3'- -GGCaCUGgUG------------GCGCUCGGCGUu-----GCCG- -5'
23399 3' -58.8 NC_005259.1 + 2007 0.69 0.475675
Target:  5'- aCGcGGCCAUCGgGuGgCGCAcCGGCa -3'
miRNA:   3'- gGCaCUGGUGGCgCuCgGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 3325 0.69 0.475675
Target:  5'- aCGUGAgCGCCGgGcAGCUcuGCGugcuCGGCa -3'
miRNA:   3'- gGCACUgGUGGCgC-UCGG--CGUu---GCCG- -5'
23399 3' -58.8 NC_005259.1 + 25902 0.69 0.475675
Target:  5'- uCCGaggaUGGCCGCC-UGAGCCGCcGCcGCc -3'
miRNA:   3'- -GGC----ACUGGUGGcGCUCGGCGuUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 52951 0.69 0.475675
Target:  5'- cCCGUaagcacCCGCCGCugcccGGCUGCAuCGGCa -3'
miRNA:   3'- -GGCAcu----GGUGGCGc----UCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 53713 0.7 0.393619
Target:  5'- aCGUGGUCACCGC--GCCGCuGAUGGUg -3'
miRNA:   3'- gGCACUGGUGGCGcuCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 35634 0.7 0.393619
Target:  5'- uUCG-GGCCGCCGCcgcuGCCGC--UGGCg -3'
miRNA:   3'- -GGCaCUGGUGGCGcu--CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 45004 0.7 0.402279
Target:  5'- aCCGccGACCGCCG-GGGCCGCG-CcGCc -3'
miRNA:   3'- -GGCa-CUGGUGGCgCUCGGCGUuGcCG- -5'
23399 3' -58.8 NC_005259.1 + 24225 0.7 0.411059
Target:  5'- aCGUGACCGgCG-GGGCCGa---GGCa -3'
miRNA:   3'- gGCACUGGUgGCgCUCGGCguugCCG- -5'
23399 3' -58.8 NC_005259.1 + 28973 0.7 0.411059
Target:  5'- uCgGUG-CCgagGCCGCGAGCgccCGCuACGGCc -3'
miRNA:   3'- -GgCACuGG---UGGCGCUCG---GCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 765 0.7 0.411059
Target:  5'- aCCGcGuCCACCGC--GCCGaGGCGGCu -3'
miRNA:   3'- -GGCaCuGGUGGCGcuCGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37208 0.7 0.411059
Target:  5'- gCCGccACCGCCGCc-GCCGCcGgGGCg -3'
miRNA:   3'- -GGCacUGGUGGCGcuCGGCGuUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 48460 0.7 0.419958
Target:  5'- gCGUu-CCACCGCGcgccgGGUCGCGuCGGCc -3'
miRNA:   3'- gGCAcuGGUGGCGC-----UCGGCGUuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.