Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23399 | 3' | -58.8 | NC_005259.1 | + | 26489 | 0.7 | 0.385081 |
Target: 5'- gUCGcgGAaCGCCGCGAGCuCGCcgccCGGCg -3' miRNA: 3'- -GGCa-CUgGUGGCGCUCG-GCGuu--GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 53713 | 0.7 | 0.393619 |
Target: 5'- aCGUGGUCACCGC--GCCGCuGAUGGUg -3' miRNA: 3'- gGCACUGGUGGCGcuCGGCG-UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 15066 | 0.69 | 0.45106 |
Target: 5'- aCCGUGGCCACCcugGCccuugagccggucauGcGCCGCAG-GGCc -3' miRNA: 3'- -GGCACUGGUGG---CG---------------CuCGGCGUUgCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 3064 | 0.69 | 0.45574 |
Target: 5'- aCCGUcgacgGGCCgagGCCGacaagaGAGCCGCGcagcgaugagcggGCGGCc -3' miRNA: 3'- -GGCA-----CUGG---UGGCg-----CUCGGCGU-------------UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 13236 | 0.69 | 0.456679 |
Target: 5'- ---cGGCCACCGUGAggGCCGagcaccCGGCGGUa -3' miRNA: 3'- ggcaCUGGUGGCGCU--CGGC------GUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 58188 | 0.69 | 0.456679 |
Target: 5'- aCGUcuuGACCGCCGUGGGCUuGC--CGGUg -3' miRNA: 3'- gGCA---CUGGUGGCGCUCGG-CGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 8861 | 0.69 | 0.466127 |
Target: 5'- gCGUGcCCGCCGCcuGCCGCAcccACGccGCc -3' miRNA: 3'- gGCACuGGUGGCGcuCGGCGU---UGC--CG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 2007 | 0.69 | 0.475675 |
Target: 5'- aCGcGGCCAUCGgGuGgCGCAcCGGCa -3' miRNA: 3'- gGCaCUGGUGGCgCuCgGCGUuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 3325 | 0.69 | 0.475675 |
Target: 5'- aCGUGAgCGCCGgGcAGCUcuGCGugcuCGGCa -3' miRNA: 3'- gGCACUgGUGGCgC-UCGG--CGUu---GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 25902 | 0.69 | 0.475675 |
Target: 5'- uCCGaggaUGGCCGCC-UGAGCCGCcGCcGCc -3' miRNA: 3'- -GGC----ACUGGUGGcGCUCGGCGuUGcCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 25418 | 0.69 | 0.447334 |
Target: 5'- aCCGgGACgGCgaggucgaggaaUGCGAGCCGUAugagguCGGCg -3' miRNA: 3'- -GGCaCUGgUG------------GCGCUCGGCGUu-----GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 19377 | 0.69 | 0.447334 |
Target: 5'- cCCGcUGAUCACCG---GCCcCAACGGCa -3' miRNA: 3'- -GGC-ACUGGUGGCgcuCGGcGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 56569 | 0.69 | 0.428971 |
Target: 5'- uCgGUGAUCGUCGCG-GCUGCGAUGaGCg -3' miRNA: 3'- -GgCACUGGUGGCGCuCGGCGUUGC-CG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 19828 | 0.69 | 0.428971 |
Target: 5'- aCCcUGAUCAUCGCGGcugcuGCCGCGcuCGGUg -3' miRNA: 3'- -GGcACUGGUGGCGCU-----CGGCGUu-GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 22613 | 0.69 | 0.428971 |
Target: 5'- gCCGccGACCGCCGCccGAucaucuucGCCGCGuCGGUc -3' miRNA: 3'- -GGCa-CUGGUGGCG--CU--------CGGCGUuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 48049 | 0.69 | 0.428971 |
Target: 5'- cCCgGUGGCCACgGCGGguagcGCCGCcgcgcccugagcGAUGGUg -3' miRNA: 3'- -GG-CACUGGUGgCGCU-----CGGCG------------UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 66634 | 0.69 | 0.428971 |
Target: 5'- uCCcUGGCCACCGCucggauuGCUGCcgguCGGCg -3' miRNA: 3'- -GGcACUGGUGGCGcu-----CGGCGuu--GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 51023 | 0.69 | 0.438098 |
Target: 5'- gUCGUG-CUACCGaCGAGCgGCG--GGCa -3' miRNA: 3'- -GGCACuGGUGGC-GCUCGgCGUugCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 6116 | 0.69 | 0.447334 |
Target: 5'- gCCGaGGCCGCCgcuacGCGGGCacuGCAACGcGUa -3' miRNA: 3'- -GGCaCUGGUGG-----CGCUCGg--CGUUGC-CG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 52951 | 0.69 | 0.475675 |
Target: 5'- cCCGUaagcacCCGCCGCugcccGGCUGCAuCGGCa -3' miRNA: 3'- -GGCAcu----GGUGGCGc----UCGGCGUuGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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