miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 2166 0.71 0.328076
Target:  5'- gCGUcGAgCCGCCGguugccgaggucaUGGGCCGCuACGGCa -3'
miRNA:   3'- gGCA-CU-GGUGGC-------------GCUCGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 2528 0.71 0.328834
Target:  5'- gCCGacGCCACCGCGcGCauuggacagauCGCGGCGGUc -3'
miRNA:   3'- -GGCacUGGUGGCGCuCG-----------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13421 0.71 0.328834
Target:  5'- gCCGgggucGCCGCCG-GGGCCGCGcuaGGCg -3'
miRNA:   3'- -GGCac---UGGUGGCgCUCGGCGUug-CCG- -5'
23399 3' -58.8 NC_005259.1 + 29038 0.71 0.336485
Target:  5'- aCCcUGACCAacgaCGaGAGCCGCGagcGCGGUa -3'
miRNA:   3'- -GGcACUGGUg---GCgCUCGGCGU---UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 64750 0.71 0.352175
Target:  5'- cCCGc--CCACCGCGccUCGCGACGGUg -3'
miRNA:   3'- -GGCacuGGUGGCGCucGGCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 35867 0.71 0.352175
Target:  5'- gCCGcGuCCACCGC-AGCCGCcGCcgaGGCa -3'
miRNA:   3'- -GGCaCuGGUGGCGcUCGGCGuUG---CCG- -5'
23399 3' -58.8 NC_005259.1 + 5533 0.71 0.367554
Target:  5'- gCUGUGGCUgcucucgcccgagGCCGCGuggGGUgGUGACGGCg -3'
miRNA:   3'- -GGCACUGG-------------UGGCGC---UCGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 19249 0.71 0.368376
Target:  5'- aUCGaUGGCCGCCuGcCGGGCCGCccGAUGGa -3'
miRNA:   3'- -GGC-ACUGGUGG-C-GCUCGGCG--UUGCCg -5'
23399 3' -58.8 NC_005259.1 + 60148 0.71 0.368376
Target:  5'- gCCuUGGCCGCCGCcucAGCgGCcucacgGGCGGCg -3'
miRNA:   3'- -GGcACUGGUGGCGc--UCGgCG------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13617 0.7 0.376666
Target:  5'- aCGgcaACCACaucuGCGGGCCGCucaacgucGACGGCu -3'
miRNA:   3'- gGCac-UGGUGg---CGCUCGGCG--------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 53666 0.7 0.376666
Target:  5'- gCCGaGGCCcCaCGCGGGCauCGCGAUGGUg -3'
miRNA:   3'- -GGCaCUGGuG-GCGCUCG--GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 64607 0.7 0.385081
Target:  5'- -gGUGACUgACgGCGAG-CGCGACGGg -3'
miRNA:   3'- ggCACUGG-UGgCGCUCgGCGUUGCCg -5'
23399 3' -58.8 NC_005259.1 + 26489 0.7 0.385081
Target:  5'- gUCGcgGAaCGCCGCGAGCuCGCcgccCGGCg -3'
miRNA:   3'- -GGCa-CUgGUGGCGCUCG-GCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 35634 0.7 0.393619
Target:  5'- uUCG-GGCCGCCGCcgcuGCCGC--UGGCg -3'
miRNA:   3'- -GGCaCUGGUGGCGcu--CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 53713 0.7 0.393619
Target:  5'- aCGUGGUCACCGC--GCCGCuGAUGGUg -3'
miRNA:   3'- gGCACUGGUGGCGcuCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 45004 0.7 0.402279
Target:  5'- aCCGccGACCGCCG-GGGCCGCG-CcGCc -3'
miRNA:   3'- -GGCa-CUGGUGGCgCUCGGCGUuGcCG- -5'
23399 3' -58.8 NC_005259.1 + 24225 0.7 0.411059
Target:  5'- aCGUGACCGgCG-GGGCCGa---GGCa -3'
miRNA:   3'- gGCACUGGUgGCgCUCGGCguugCCG- -5'
23399 3' -58.8 NC_005259.1 + 28973 0.7 0.411059
Target:  5'- uCgGUG-CCgagGCCGCGAGCgccCGCuACGGCc -3'
miRNA:   3'- -GgCACuGG---UGGCGCUCG---GCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 765 0.7 0.411059
Target:  5'- aCCGcGuCCACCGC--GCCGaGGCGGCu -3'
miRNA:   3'- -GGCaCuGGUGGCGcuCGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37208 0.7 0.411059
Target:  5'- gCCGccACCGCCGCc-GCCGCcGgGGCg -3'
miRNA:   3'- -GGCacUGGUGGCGcuCGGCGuUgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.