Results 81 - 100 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23399 | 3' | -58.8 | NC_005259.1 | + | 52951 | 0.69 | 0.475675 |
Target: 5'- cCCGUaagcacCCGCCGCugcccGGCUGCAuCGGCa -3' miRNA: 3'- -GGCAcu----GGUGGCGc----UCGGCGUuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 12486 | 0.68 | 0.484351 |
Target: 5'- cCCGUaguccagcacucaGGCguaGCCGCuGGGCCGCu-CGGCu -3' miRNA: 3'- -GGCA-------------CUGg--UGGCG-CUCGGCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 4497 | 0.68 | 0.485319 |
Target: 5'- -gGUGaucGCCACCGCgccggGAGUgGCGcugcGCGGCa -3' miRNA: 3'- ggCAC---UGGUGGCG-----CUCGgCGU----UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 23888 | 0.68 | 0.485319 |
Target: 5'- uCCGcuGCCGCC-CGAGCCGCcGCGcccGCc -3' miRNA: 3'- -GGCacUGGUGGcGCUCGGCGuUGC---CG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 25526 | 0.68 | 0.485319 |
Target: 5'- aCCGUGG-CAUCGCGuggguGCUGgGACGGa -3' miRNA: 3'- -GGCACUgGUGGCGCu----CGGCgUUGCCg -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 60532 | 0.68 | 0.485319 |
Target: 5'- gCCG-GGCCGggaCGC-AGCCGCucguCGGCa -3' miRNA: 3'- -GGCaCUGGUg--GCGcUCGGCGuu--GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 4129 | 0.68 | 0.493102 |
Target: 5'- aCGUGGCCAagaccguCgGCGAGUucaaggaCGCGAUGGUc -3' miRNA: 3'- gGCACUGGU-------GgCGCUCG-------GCGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 57986 | 0.68 | 0.495056 |
Target: 5'- aUCGUGACC-CCGguCGAGCCaGCGACc-- -3' miRNA: 3'- -GGCACUGGuGGC--GCUCGG-CGUUGccg -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 39446 | 0.68 | 0.495056 |
Target: 5'- gCGUGAUCggACCggagaaaacugGCGAGCCGUcgucGCGGUa -3' miRNA: 3'- gGCACUGG--UGG-----------CGCUCGGCGu---UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 32550 | 0.68 | 0.501924 |
Target: 5'- gCUGuUGGCCGCCccgGCGAGCgCggggauagcguuggGCAGCGGUu -3' miRNA: 3'- -GGC-ACUGGUGG---CGCUCG-G--------------CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 13735 | 0.68 | 0.502909 |
Target: 5'- gCCGUGAUgGcCCGCGAGauaugccaagaccUCGCcgacgacguguucGACGGCg -3' miRNA: 3'- -GGCACUGgU-GGCGCUC-------------GGCG-------------UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 22670 | 0.68 | 0.503895 |
Target: 5'- gCCGacgcacUGACCGCCGcCGAuuuccccgccgucGCCGuCAcCGGCu -3' miRNA: 3'- -GGC------ACUGGUGGC-GCU-------------CGGC-GUuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 53257 | 0.68 | 0.504881 |
Target: 5'- aCCGUcGCCGCCGCugucGCCGguGCcGCc -3' miRNA: 3'- -GGCAcUGGUGGCGcu--CGGCguUGcCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 8958 | 0.68 | 0.513794 |
Target: 5'- gCCGUGgacgggcACCguGCCGgGAcguaggugccaGCgGCGACGGCa -3' miRNA: 3'- -GGCAC-------UGG--UGGCgCU-----------CGgCGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 64002 | 0.68 | 0.513794 |
Target: 5'- gCGUGAcggcauaCCACCGCGcccgAGgCGCGGCgaGGCc -3' miRNA: 3'- gGCACU-------GGUGGCGC----UCgGCGUUG--CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 6929 | 0.68 | 0.524774 |
Target: 5'- aCCGccGCCGCCuugaggccgaGCucGCCGCcGACGGCa -3' miRNA: 3'- -GGCacUGGUGG----------CGcuCGGCG-UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 37239 | 0.68 | 0.524774 |
Target: 5'- cCCGUGccggauuggcuGCCGCCGUugccaggcuuGAgGCCGCc-CGGCa -3' miRNA: 3'- -GGCAC-----------UGGUGGCG----------CU-CGGCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 42495 | 0.68 | 0.524774 |
Target: 5'- gCCGUGACCcguCCgGCGguguGGCCaGCAGCcguccGGCc -3' miRNA: 3'- -GGCACUGGu--GG-CGC----UCGG-CGUUG-----CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 634 | 0.68 | 0.534833 |
Target: 5'- aCCGUGacaacGCCACCGcCGAGgaCGUgcucGAgGGCa -3' miRNA: 3'- -GGCAC-----UGGUGGC-GCUCg-GCG----UUgCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 60268 | 0.68 | 0.534833 |
Target: 5'- --cUGGCCACCaGCGcuGCCG-GGCGGCc -3' miRNA: 3'- ggcACUGGUGG-CGCu-CGGCgUUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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