miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 37725 0.66 0.615099
Target:  5'- cCCGaggcaccGCCGCCGaCGAGCUGCucgaugaccagcGCGGUg -3'
miRNA:   3'- -GGCac-----UGGUGGC-GCUCGGCGu-----------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 9352 0.66 0.606769
Target:  5'- aCCGaUGACCGuCUGUaGGUCGUAcuCGGCg -3'
miRNA:   3'- -GGC-ACUGGU-GGCGcUCGGCGUu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 45394 0.66 0.606769
Target:  5'- cUCGgGGUCGCCGcCGAGCgCGCuGAUGGCc -3'
miRNA:   3'- -GGCaCUGGUGGC-GCUCG-GCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 23260 0.66 0.606769
Target:  5'- gCgGUGGCCACCaUGAGCaccaagaccgggCGCggUGGUu -3'
miRNA:   3'- -GgCACUGGUGGcGCUCG------------GCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 47142 0.66 0.605729
Target:  5'- aUCGUgGGCCACaacguGCGcAGCagaucacCGUAGCGGCg -3'
miRNA:   3'- -GGCA-CUGGUGg----CGC-UCG-------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33990 0.67 0.596375
Target:  5'- gCCGgguaUGCgGUGAGCUGCAAcCGGCu -3'
miRNA:   3'- -GGCacugGUGgCGCUCGGCGUU-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 59877 0.67 0.596375
Target:  5'- uUGUGGCCgaaACCGgGGGCgaCGCGACuuGGUg -3'
miRNA:   3'- gGCACUGG---UGGCgCUCG--GCGUUG--CCG- -5'
23399 3' -58.8 NC_005259.1 + 63016 0.67 0.596375
Target:  5'- gCUGUGGgaacUCGaugcCCGCGAGCUgacucgacaGCAGCGGUg -3'
miRNA:   3'- -GGCACU----GGU----GGCGCUCGG---------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 20043 0.67 0.596375
Target:  5'- aCCGUcaAgCGCUGCGAuguccGCUGCggUGGCg -3'
miRNA:   3'- -GGCAc-UgGUGGCGCU-----CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8407 0.67 0.596375
Target:  5'- gCCG-GGCCACCucgcugGCGAGCaUGCGAugcucguugcCGGUg -3'
miRNA:   3'- -GGCaCUGGUGG------CGCUCG-GCGUU----------GCCG- -5'
23399 3' -58.8 NC_005259.1 + 3121 0.67 0.586009
Target:  5'- gCGcGG-CACCGUGGGCaGCgGACGGCa -3'
miRNA:   3'- gGCaCUgGUGGCGCUCGgCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 6668 0.67 0.586009
Target:  5'- uCCGUGACg--CGCGAGCUGCccgcuuccaagAGUGGCg -3'
miRNA:   3'- -GGCACUGgugGCGCUCGGCG-----------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 59287 0.67 0.586009
Target:  5'- gCgGUGugCAgaccuacgcugUCGUG-GCgGCAGCGGCg -3'
miRNA:   3'- -GgCACugGU-----------GGCGCuCGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 28222 0.67 0.586009
Target:  5'- gUCGUGccGCCACCGUcGGCgGCGG-GGUg -3'
miRNA:   3'- -GGCAC--UGGUGGCGcUCGgCGUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 61952 0.67 0.586009
Target:  5'- gCCGgGGCCACCGC-AGCCuCA-CGcGCc -3'
miRNA:   3'- -GGCaCUGGUGGCGcUCGGcGUuGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 8300 0.67 0.584974
Target:  5'- cCCGcacGGaaaCGCCGCcuugucgGAGCUGCcGACGGCg -3'
miRNA:   3'- -GGCa--CUg--GUGGCG-------CUCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 40456 0.67 0.584974
Target:  5'- gCCGgugugguUGACgUACUGcCGGGCCGC-GCGGUu -3'
miRNA:   3'- -GGC-------ACUG-GUGGC-GCUCGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 35961 0.67 0.574646
Target:  5'- aCGUGACCguggucgcugucaACgGCGGGaaaC-CGACGGCg -3'
miRNA:   3'- gGCACUGG-------------UGgCGCUCg--GcGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8184 0.67 0.569497
Target:  5'- cCCGUGGCCugccguuuacgcGCCcgaugucgggcaacaGCGAGCgUGCggUGGUg -3'
miRNA:   3'- -GGCACUGG------------UGG---------------CGCUCG-GCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 35896 0.67 0.565387
Target:  5'- ---aGACCACgGCGAGCCauucuGCGuugcGCGGg -3'
miRNA:   3'- ggcaCUGGUGgCGCUCGG-----CGU----UGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.