miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 35896 0.67 0.565387
Target:  5'- ---aGACCACgGCGAGCCauucuGCGuugcGCGGg -3'
miRNA:   3'- ggcaCUGGUGgCGCUCGG-----CGU----UGCCg -5'
23399 3' -58.8 NC_005259.1 + 29341 0.67 0.565387
Target:  5'- cCCaUGACCACCacCGAGaCCGCcgucgaGGCa -3'
miRNA:   3'- -GGcACUGGUGGc-GCUC-GGCGuug---CCG- -5'
23399 3' -58.8 NC_005259.1 + 8059 0.67 0.555145
Target:  5'- gCCGgucGCCGCCGacaucgagauCGuGCCGCGcUGGCg -3'
miRNA:   3'- -GGCac-UGGUGGC----------GCuCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 53040 0.67 0.555145
Target:  5'- aUCGUGACC-UCGCGGgaaauuGCUGCGugACGGg -3'
miRNA:   3'- -GGCACUGGuGGCGCU------CGGCGU--UGCCg -5'
23399 3' -58.8 NC_005259.1 + 33080 0.67 0.552083
Target:  5'- uCCGcUGGCCAccuguagguaggcCCGCGAGCgUGCcuguagggccacGCGGCa -3'
miRNA:   3'- -GGC-ACUGGU-------------GGCGCUCG-GCGu-----------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 11873 0.67 0.551063
Target:  5'- aCGUGACCGCCGCaccgucccaaucGCCGaCAgucucGCGGa -3'
miRNA:   3'- gGCACUGGUGGCGcu----------CGGC-GU-----UGCCg -5'
23399 3' -58.8 NC_005259.1 + 27270 0.67 0.544958
Target:  5'- aCCGauacGCCGCCuuGAGCCGCcGCuGCa -3'
miRNA:   3'- -GGCac--UGGUGGcgCUCGGCGuUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 43710 0.67 0.544958
Target:  5'- aCCGcgcGACCGCauCGAGUCGaUGGCGGCc -3'
miRNA:   3'- -GGCa--CUGGUGgcGCUCGGC-GUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 30018 0.67 0.544958
Target:  5'- -gGUGACCACC----GCCGgGGCGGUg -3'
miRNA:   3'- ggCACUGGUGGcgcuCGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 38744 0.67 0.544958
Target:  5'- nCgGUGGcCCGCCGCaggccgguGAGCUGCGcgaucauguCGGCg -3'
miRNA:   3'- -GgCACU-GGUGGCG--------CUCGGCGUu--------GCCG- -5'
23399 3' -58.8 NC_005259.1 + 58799 0.67 0.544958
Target:  5'- gCgGUGAUUGCCucgGCGGGCuCGCGcugcuCGGCa -3'
miRNA:   3'- -GgCACUGGUGG---CGCUCG-GCGUu----GCCG- -5'
23399 3' -58.8 NC_005259.1 + 4922 0.67 0.544958
Target:  5'- gCCGUaGGgCACCGCGugaucguccGGCCcgaaAACGGCu -3'
miRNA:   3'- -GGCA-CUgGUGGCGC---------UCGGcg--UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 61741 0.67 0.544958
Target:  5'- -gGUGugCGuCCgGCGAGaucugUGCGGCGGCa -3'
miRNA:   3'- ggCACugGU-GG-CGCUCg----GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 23350 0.67 0.544958
Target:  5'- cUCGaGGCUGCCuGCGAgGCCGCcgaGGCa -3'
miRNA:   3'- -GGCaCUGGUGG-CGCU-CGGCGuugCCG- -5'
23399 3' -58.8 NC_005259.1 + 60268 0.68 0.534833
Target:  5'- --cUGGCCACCaGCGcuGCCG-GGCGGCc -3'
miRNA:   3'- ggcACUGGUGG-CGCu-CGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 634 0.68 0.534833
Target:  5'- aCCGUGacaacGCCACCGcCGAGgaCGUgcucGAgGGCa -3'
miRNA:   3'- -GGCAC-----UGGUGGC-GCUCg-GCG----UUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 42495 0.68 0.524774
Target:  5'- gCCGUGACCcguCCgGCGguguGGCCaGCAGCcguccGGCc -3'
miRNA:   3'- -GGCACUGGu--GG-CGC----UCGG-CGUUG-----CCG- -5'
23399 3' -58.8 NC_005259.1 + 6929 0.68 0.524774
Target:  5'- aCCGccGCCGCCuugaggccgaGCucGCCGCcGACGGCa -3'
miRNA:   3'- -GGCacUGGUGG----------CGcuCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37239 0.68 0.524774
Target:  5'- cCCGUGccggauuggcuGCCGCCGUugccaggcuuGAgGCCGCc-CGGCa -3'
miRNA:   3'- -GGCAC-----------UGGUGGCG----------CU-CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8958 0.68 0.513794
Target:  5'- gCCGUGgacgggcACCguGCCGgGAcguaggugccaGCgGCGACGGCa -3'
miRNA:   3'- -GGCAC-------UGG--UGGCgCU-----------CGgCGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.