miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 64002 0.68 0.513794
Target:  5'- gCGUGAcggcauaCCACCGCGcccgAGgCGCGGCgaGGCc -3'
miRNA:   3'- gGCACU-------GGUGGCGC----UCgGCGUUG--CCG- -5'
23399 3' -58.8 NC_005259.1 + 53257 0.68 0.504881
Target:  5'- aCCGUcGCCGCCGCugucGCCGguGCcGCc -3'
miRNA:   3'- -GGCAcUGGUGGCGcu--CGGCguUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 22670 0.68 0.503895
Target:  5'- gCCGacgcacUGACCGCCGcCGAuuuccccgccgucGCCGuCAcCGGCu -3'
miRNA:   3'- -GGC------ACUGGUGGC-GCU-------------CGGC-GUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13735 0.68 0.502909
Target:  5'- gCCGUGAUgGcCCGCGAGauaugccaagaccUCGCcgacgacguguucGACGGCg -3'
miRNA:   3'- -GGCACUGgU-GGCGCUC-------------GGCG-------------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 32550 0.68 0.501924
Target:  5'- gCUGuUGGCCGCCccgGCGAGCgCggggauagcguuggGCAGCGGUu -3'
miRNA:   3'- -GGC-ACUGGUGG---CGCUCG-G--------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 57986 0.68 0.495056
Target:  5'- aUCGUGACC-CCGguCGAGCCaGCGACc-- -3'
miRNA:   3'- -GGCACUGGuGGC--GCUCGG-CGUUGccg -5'
23399 3' -58.8 NC_005259.1 + 39446 0.68 0.495056
Target:  5'- gCGUGAUCggACCggagaaaacugGCGAGCCGUcgucGCGGUa -3'
miRNA:   3'- gGCACUGG--UGG-----------CGCUCGGCGu---UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 4129 0.68 0.493102
Target:  5'- aCGUGGCCAagaccguCgGCGAGUucaaggaCGCGAUGGUc -3'
miRNA:   3'- gGCACUGGU-------GgCGCUCG-------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 4497 0.68 0.485319
Target:  5'- -gGUGaucGCCACCGCgccggGAGUgGCGcugcGCGGCa -3'
miRNA:   3'- ggCAC---UGGUGGCG-----CUCGgCGU----UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 23888 0.68 0.485319
Target:  5'- uCCGcuGCCGCC-CGAGCCGCcGCGcccGCc -3'
miRNA:   3'- -GGCacUGGUGGcGCUCGGCGuUGC---CG- -5'
23399 3' -58.8 NC_005259.1 + 25526 0.68 0.485319
Target:  5'- aCCGUGG-CAUCGCGuggguGCUGgGACGGa -3'
miRNA:   3'- -GGCACUgGUGGCGCu----CGGCgUUGCCg -5'
23399 3' -58.8 NC_005259.1 + 60532 0.68 0.485319
Target:  5'- gCCG-GGCCGggaCGC-AGCCGCucguCGGCa -3'
miRNA:   3'- -GGCaCUGGUg--GCGcUCGGCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 12486 0.68 0.484351
Target:  5'- cCCGUaguccagcacucaGGCguaGCCGCuGGGCCGCu-CGGCu -3'
miRNA:   3'- -GGCA-------------CUGg--UGGCG-CUCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 25902 0.69 0.475675
Target:  5'- uCCGaggaUGGCCGCC-UGAGCCGCcGCcGCc -3'
miRNA:   3'- -GGC----ACUGGUGGcGCUCGGCGuUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 3325 0.69 0.475675
Target:  5'- aCGUGAgCGCCGgGcAGCUcuGCGugcuCGGCa -3'
miRNA:   3'- gGCACUgGUGGCgC-UCGG--CGUu---GCCG- -5'
23399 3' -58.8 NC_005259.1 + 2007 0.69 0.475675
Target:  5'- aCGcGGCCAUCGgGuGgCGCAcCGGCa -3'
miRNA:   3'- gGCaCUGGUGGCgCuCgGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 52951 0.69 0.475675
Target:  5'- cCCGUaagcacCCGCCGCugcccGGCUGCAuCGGCa -3'
miRNA:   3'- -GGCAcu----GGUGGCGc----UCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8861 0.69 0.466127
Target:  5'- gCGUGcCCGCCGCcuGCCGCAcccACGccGCc -3'
miRNA:   3'- gGCACuGGUGGCGcuCGGCGU---UGC--CG- -5'
23399 3' -58.8 NC_005259.1 + 13236 0.69 0.456679
Target:  5'- ---cGGCCACCGUGAggGCCGagcaccCGGCGGUa -3'
miRNA:   3'- ggcaCUGGUGGCGCU--CGGC------GUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 58188 0.69 0.456679
Target:  5'- aCGUcuuGACCGCCGUGGGCUuGC--CGGUg -3'
miRNA:   3'- gGCA---CUGGUGGCGCUCGG-CGuuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.