miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 634 0.68 0.534833
Target:  5'- aCCGUGacaacGCCACCGcCGAGgaCGUgcucGAgGGCa -3'
miRNA:   3'- -GGCAC-----UGGUGGC-GCUCg-GCG----UUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 765 0.7 0.411059
Target:  5'- aCCGcGuCCACCGC--GCCGaGGCGGCu -3'
miRNA:   3'- -GGCaCuGGUGGCGcuCGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 1879 0.66 0.617183
Target:  5'- uCCGUaagcaGGCCGCCgagaucgcGCGAGCUGCcgaggaAGCGcGCc -3'
miRNA:   3'- -GGCA-----CUGGUGG--------CGCUCGGCG------UUGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 2007 0.69 0.475675
Target:  5'- aCGcGGCCAUCGgGuGgCGCAcCGGCa -3'
miRNA:   3'- gGCaCUGGUGGCgCuCgGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 2166 0.71 0.328076
Target:  5'- gCGUcGAgCCGCCGguugccgaggucaUGGGCCGCuACGGCa -3'
miRNA:   3'- gGCA-CU-GGUGGC-------------GCUCGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 2528 0.71 0.328834
Target:  5'- gCCGacGCCACCGCGcGCauuggacagauCGCGGCGGUc -3'
miRNA:   3'- -GGCacUGGUGGCGCuCG-----------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 3064 0.69 0.45574
Target:  5'- aCCGUcgacgGGCCgagGCCGacaagaGAGCCGCGcagcgaugagcggGCGGCc -3'
miRNA:   3'- -GGCA-----CUGG---UGGCg-----CUCGGCGU-------------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 3121 0.67 0.586009
Target:  5'- gCGcGG-CACCGUGGGCaGCgGACGGCa -3'
miRNA:   3'- gGCaCUgGUGGCGCUCGgCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 3325 0.69 0.475675
Target:  5'- aCGUGAgCGCCGgGcAGCUcuGCGugcuCGGCa -3'
miRNA:   3'- gGCACUgGUGGCgC-UCGG--CGUu---GCCG- -5'
23399 3' -58.8 NC_005259.1 + 3597 0.72 0.285641
Target:  5'- aCCGcacUGuCCAucCUGCGGGCCuaccGCAACGGCu -3'
miRNA:   3'- -GGC---ACuGGU--GGCGCUCGG----CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 3968 0.77 0.152601
Target:  5'- uCUG-GACCugagcggucCCGCGAGCaCGCGAUGGCg -3'
miRNA:   3'- -GGCaCUGGu--------GGCGCUCG-GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 4129 0.68 0.493102
Target:  5'- aCGUGGCCAagaccguCgGCGAGUucaaggaCGCGAUGGUc -3'
miRNA:   3'- gGCACUGGU-------GgCGCUCG-------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 4497 0.68 0.485319
Target:  5'- -gGUGaucGCCACCGCgccggGAGUgGCGcugcGCGGCa -3'
miRNA:   3'- ggCAC---UGGUGGCG-----CUCGgCGU----UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 4922 0.67 0.544958
Target:  5'- gCCGUaGGgCACCGCGugaucguccGGCCcgaaAACGGCu -3'
miRNA:   3'- -GGCA-CUgGUGGCGC---------UCGGcg--UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 5533 0.71 0.367554
Target:  5'- gCUGUGGCUgcucucgcccgagGCCGCGuggGGUgGUGACGGCg -3'
miRNA:   3'- -GGCACUGG-------------UGGCGC---UCGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 6116 0.69 0.447334
Target:  5'- gCCGaGGCCGCCgcuacGCGGGCacuGCAACGcGUa -3'
miRNA:   3'- -GGCaCUGGUGG-----CGCUCGg--CGUUGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 6668 0.67 0.586009
Target:  5'- uCCGUGACg--CGCGAGCUGCccgcuuccaagAGUGGCg -3'
miRNA:   3'- -GGCACUGgugGCGCUCGGCG-----------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 6929 0.68 0.524774
Target:  5'- aCCGccGCCGCCuugaggccgaGCucGCCGCcGACGGCa -3'
miRNA:   3'- -GGCacUGGUGG----------CGcuCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 7384 0.76 0.169283
Target:  5'- cUCGgGACagacCCGCGAGacCCGCAACGGCa -3'
miRNA:   3'- -GGCaCUGgu--GGCGCUC--GGCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8059 0.67 0.555145
Target:  5'- gCCGgucGCCGCCGacaucgagauCGuGCCGCGcUGGCg -3'
miRNA:   3'- -GGCac-UGGUGGC----------GCuCGGCGUuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.