miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 8184 0.67 0.569497
Target:  5'- cCCGUGGCCugccguuuacgcGCCcgaugucgggcaacaGCGAGCgUGCggUGGUg -3'
miRNA:   3'- -GGCACUGG------------UGG---------------CGCUCG-GCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8300 0.67 0.584974
Target:  5'- cCCGcacGGaaaCGCCGCcuugucgGAGCUGCcGACGGCg -3'
miRNA:   3'- -GGCa--CUg--GUGGCG-------CUCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 8407 0.67 0.596375
Target:  5'- gCCG-GGCCACCucgcugGCGAGCaUGCGAugcucguugcCGGUg -3'
miRNA:   3'- -GGCaCUGGUGG------CGCUCG-GCGUU----------GCCG- -5'
23399 3' -58.8 NC_005259.1 + 8861 0.69 0.466127
Target:  5'- gCGUGcCCGCCGCcuGCCGCAcccACGccGCc -3'
miRNA:   3'- gGCACuGGUGGCGcuCGGCGU---UGC--CG- -5'
23399 3' -58.8 NC_005259.1 + 8958 0.68 0.513794
Target:  5'- gCCGUGgacgggcACCguGCCGgGAcguaggugccaGCgGCGACGGCa -3'
miRNA:   3'- -GGCAC-------UGG--UGGCgCU-----------CGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 9352 0.66 0.606769
Target:  5'- aCCGaUGACCGuCUGUaGGUCGUAcuCGGCg -3'
miRNA:   3'- -GGC-ACUGGU-GGCGcUCGGCGUu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 9524 0.72 0.299522
Target:  5'- gCGUcGACCGCCGCcgggucaccggaGAGCUGCc-CGGCc -3'
miRNA:   3'- gGCA-CUGGUGGCG------------CUCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 10735 0.73 0.253168
Target:  5'- uCgGUGAUCACCGCGcGCUGCcg-GGCg -3'
miRNA:   3'- -GgCACUGGUGGCGCuCGGCGuugCCG- -5'
23399 3' -58.8 NC_005259.1 + 11873 0.67 0.551063
Target:  5'- aCGUGACCGCCGCaccgucccaaucGCCGaCAgucucGCGGa -3'
miRNA:   3'- gGCACUGGUGGCGcu----------CGGC-GU-----UGCCg -5'
23399 3' -58.8 NC_005259.1 + 12015 0.66 0.638037
Target:  5'- uCgGUGGCCuuguacGgUGCGGGCgGCAAcCGGUa -3'
miRNA:   3'- -GgCACUGG------UgGCGCUCGgCGUU-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 12486 0.68 0.484351
Target:  5'- cCCGUaguccagcacucaGGCguaGCCGCuGGGCCGCu-CGGCu -3'
miRNA:   3'- -GGCA-------------CUGg--UGGCG-CUCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 12530 0.66 0.617183
Target:  5'- cCCGUaGAgCCGa-GCGAGCC-CcACGGCa -3'
miRNA:   3'- -GGCA-CU-GGUggCGCUCGGcGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13236 0.69 0.456679
Target:  5'- ---cGGCCACCGUGAggGCCGagcaccCGGCGGUa -3'
miRNA:   3'- ggcaCUGGUGGCGCU--CGGC------GUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13421 0.71 0.328834
Target:  5'- gCCGgggucGCCGCCG-GGGCCGCGcuaGGCg -3'
miRNA:   3'- -GGCac---UGGUGGCgCUCGGCGUug-CCG- -5'
23399 3' -58.8 NC_005259.1 + 13617 0.7 0.376666
Target:  5'- aCGgcaACCACaucuGCGGGCCGCucaacgucGACGGCu -3'
miRNA:   3'- gGCac-UGGUGg---CGCUCGGCG--------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13735 0.68 0.502909
Target:  5'- gCCGUGAUgGcCCGCGAGauaugccaagaccUCGCcgacgacguguucGACGGCg -3'
miRNA:   3'- -GGCACUGgU-GGCGCUC-------------GGCG-------------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13829 0.66 0.617183
Target:  5'- gCGUGAUgACCGaCGGGCacauuGCc-CGGCg -3'
miRNA:   3'- gGCACUGgUGGC-GCUCGg----CGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 14005 0.72 0.313919
Target:  5'- ---aGACCACCuuGAGUCGCugcccGACGGCa -3'
miRNA:   3'- ggcaCUGGUGGcgCUCGGCG-----UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 15066 0.69 0.45106
Target:  5'- aCCGUGGCCACCcugGCccuugagccggucauGcGCCGCAG-GGCc -3'
miRNA:   3'- -GGCACUGGUGG---CG---------------CuCGGCGUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 15300 0.66 0.617183
Target:  5'- aCCGccGACCucGCCGCccacGGUCuCGACGGCg -3'
miRNA:   3'- -GGCa-CUGG--UGGCGc---UCGGcGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.