miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 24225 0.7 0.411059
Target:  5'- aCGUGACCGgCG-GGGCCGa---GGCa -3'
miRNA:   3'- gGCACUGGUgGCgCUCGGCguugCCG- -5'
23399 3' -58.8 NC_005259.1 + 25418 0.69 0.447334
Target:  5'- aCCGgGACgGCgaggucgaggaaUGCGAGCCGUAugagguCGGCg -3'
miRNA:   3'- -GGCaCUGgUG------------GCGCUCGGCGUu-----GCCG- -5'
23399 3' -58.8 NC_005259.1 + 25526 0.68 0.485319
Target:  5'- aCCGUGG-CAUCGCGuggguGCUGgGACGGa -3'
miRNA:   3'- -GGCACUgGUGGCGCu----CGGCgUUGCCg -5'
23399 3' -58.8 NC_005259.1 + 25902 0.69 0.475675
Target:  5'- uCCGaggaUGGCCGCC-UGAGCCGCcGCcGCc -3'
miRNA:   3'- -GGC----ACUGGUGGcGCUCGGCGuUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 26489 0.7 0.385081
Target:  5'- gUCGcgGAaCGCCGCGAGCuCGCcgccCGGCg -3'
miRNA:   3'- -GGCa-CUgGUGGCGCUCG-GCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 27270 0.67 0.544958
Target:  5'- aCCGauacGCCGCCuuGAGCCGCcGCuGCa -3'
miRNA:   3'- -GGCac--UGGUGGcgCUCGGCGuUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 27383 0.74 0.229427
Target:  5'- aCgGUGACCgGCgGCGGuGUCgGCAGCGGCg -3'
miRNA:   3'- -GgCACUGG-UGgCGCU-CGG-CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 27910 0.73 0.259411
Target:  5'- gCCGaGACCG-CGCGGGUgGUAGCGGUu -3'
miRNA:   3'- -GGCaCUGGUgGCGCUCGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 28222 0.67 0.586009
Target:  5'- gUCGUGccGCCACCGUcGGCgGCGG-GGUg -3'
miRNA:   3'- -GGCAC--UGGUGGCGcUCGgCGUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 28973 0.7 0.411059
Target:  5'- uCgGUG-CCgagGCCGCGAGCgccCGCuACGGCc -3'
miRNA:   3'- -GgCACuGG---UGGCGCUCG---GCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 29038 0.71 0.336485
Target:  5'- aCCcUGACCAacgaCGaGAGCCGCGagcGCGGUa -3'
miRNA:   3'- -GGcACUGGUg---GCgCUCGGCGU---UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 29341 0.67 0.565387
Target:  5'- cCCaUGACCACCacCGAGaCCGCcgucgaGGCa -3'
miRNA:   3'- -GGcACUGGUGGc-GCUC-GGCGuug---CCG- -5'
23399 3' -58.8 NC_005259.1 + 29934 0.73 0.247049
Target:  5'- gCGUGGCCGCCacGCGgcccGGUCGCGGCuGGUg -3'
miRNA:   3'- gGCACUGGUGG--CGC----UCGGCGUUG-CCG- -5'
23399 3' -58.8 NC_005259.1 + 30018 0.67 0.544958
Target:  5'- -gGUGACCACC----GCCGgGGCGGUg -3'
miRNA:   3'- ggCACUGGUGGcgcuCGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 30708 0.7 0.419958
Target:  5'- gCGUGuuguuGCCGCCGaCGcGCCGCA-CGaGCg -3'
miRNA:   3'- gGCAC-----UGGUGGC-GCuCGGCGUuGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 32550 0.68 0.501924
Target:  5'- gCUGuUGGCCGCCccgGCGAGCgCggggauagcguuggGCAGCGGUu -3'
miRNA:   3'- -GGC-ACUGGUGG---CGCUCG-G--------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33080 0.67 0.552083
Target:  5'- uCCGcUGGCCAccuguagguaggcCCGCGAGCgUGCcuguagggccacGCGGCa -3'
miRNA:   3'- -GGC-ACUGGU-------------GGCGCUCG-GCGu-----------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33405 0.72 0.285641
Target:  5'- gCCGUGuCCACCGCGcguacGCCuccCAgcGCGGCu -3'
miRNA:   3'- -GGCACuGGUGGCGCu----CGGc--GU--UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33453 0.66 0.648461
Target:  5'- gUGUGACCcacguGCCGgGugucuggacuGCCGC-ACGGUa -3'
miRNA:   3'- gGCACUGG-----UGGCgCu---------CGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33589 0.75 0.192417
Target:  5'- gUCGcgGGCCACCGaggcgcgguCGAGCUGCAAcCGGCc -3'
miRNA:   3'- -GGCa-CUGGUGGC---------GCUCGGCGUU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.