miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 67984 0.83 0.060202
Target:  5'- gCGUGGCCaccGCCGCGAGCgucgacuugcccuccUGCGGCGGCa -3'
miRNA:   3'- gGCACUGG---UGGCGCUCG---------------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 67136 0.79 0.102576
Target:  5'- gCGUGAgcaCCGCUGUGAGCCGCuugucgaugguGGCGGCc -3'
miRNA:   3'- gGCACU---GGUGGCGCUCGGCG-----------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 66634 0.69 0.428971
Target:  5'- uCCcUGGCCACCGCucggauuGCUGCcgguCGGCg -3'
miRNA:   3'- -GGcACUGGUGGCGcu-----CGGCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 66239 0.66 0.638037
Target:  5'- gUCGUGcaGCCAUcgacgcagCGCGGcCCGCGccggGCGGCg -3'
miRNA:   3'- -GGCAC--UGGUG--------GCGCUcGGCGU----UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 64884 0.66 0.627608
Target:  5'- uCCGaguUGAUgaGCCGCGuGaCacgaGCGACGGCg -3'
miRNA:   3'- -GGC---ACUGg-UGGCGCuC-Gg---CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 64750 0.71 0.352175
Target:  5'- cCCGc--CCACCGCGccUCGCGACGGUg -3'
miRNA:   3'- -GGCacuGGUGGCGCucGGCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 64607 0.7 0.385081
Target:  5'- -gGUGACUgACgGCGAG-CGCGACGGg -3'
miRNA:   3'- ggCACUGG-UGgCGCUCgGCGUUGCCg -5'
23399 3' -58.8 NC_005259.1 + 64421 0.76 0.160747
Target:  5'- gCCGUGAgggaUCGCCGaCGAGCUGCcGgGGCg -3'
miRNA:   3'- -GGCACU----GGUGGC-GCUCGGCGuUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 64002 0.68 0.513794
Target:  5'- gCGUGAcggcauaCCACCGCGcccgAGgCGCGGCgaGGCc -3'
miRNA:   3'- gGCACU-------GGUGGCGC----UCgGCGUUG--CCG- -5'
23399 3' -58.8 NC_005259.1 + 63016 0.67 0.596375
Target:  5'- gCUGUGGgaacUCGaugcCCGCGAGCUgacucgacaGCAGCGGUg -3'
miRNA:   3'- -GGCACU----GGU----GGCGCUCGG---------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 62138 0.66 0.638037
Target:  5'- aUCGUcucGACCACCuCaGGCCGCAGCa-- -3'
miRNA:   3'- -GGCA---CUGGUGGcGcUCGGCGUUGccg -5'
23399 3' -58.8 NC_005259.1 + 61952 0.67 0.586009
Target:  5'- gCCGgGGCCACCGC-AGCCuCA-CGcGCc -3'
miRNA:   3'- -GGCaCUGGUGGCGcUCGGcGUuGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 61741 0.67 0.544958
Target:  5'- -gGUGugCGuCCgGCGAGaucugUGCGGCGGCa -3'
miRNA:   3'- ggCACugGU-GG-CGCUCg----GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 60532 0.68 0.485319
Target:  5'- gCCG-GGCCGggaCGC-AGCCGCucguCGGCa -3'
miRNA:   3'- -GGCaCUGGUg--GCGcUCGGCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 60268 0.68 0.534833
Target:  5'- --cUGGCCACCaGCGcuGCCG-GGCGGCc -3'
miRNA:   3'- ggcACUGGUGG-CGCu-CGGCgUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 60148 0.71 0.368376
Target:  5'- gCCuUGGCCGCCGCcucAGCgGCcucacgGGCGGCg -3'
miRNA:   3'- -GGcACUGGUGGCGc--UCGgCG------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 59877 0.67 0.596375
Target:  5'- uUGUGGCCgaaACCGgGGGCgaCGCGACuuGGUg -3'
miRNA:   3'- gGCACUGG---UGGCgCUCG--GCGUUG--CCG- -5'
23399 3' -58.8 NC_005259.1 + 59388 0.73 0.278225
Target:  5'- aCCGUGccuCCGCgCGCGAGCgugaccuCGCGcAUGGCg -3'
miRNA:   3'- -GGCACu--GGUG-GCGCUCG-------GCGU-UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 59287 0.67 0.586009
Target:  5'- gCgGUGugCAgaccuacgcugUCGUG-GCgGCAGCGGCg -3'
miRNA:   3'- -GgCACugGU-----------GGCGCuCGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 58799 0.67 0.544958
Target:  5'- gCgGUGAUUGCCucgGCGGGCuCGCGcugcuCGGCa -3'
miRNA:   3'- -GgCACUGGUGG---CGCUCG-GCGUu----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.