miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 58188 0.69 0.456679
Target:  5'- aCGUcuuGACCGCCGUGGGCUuGC--CGGUg -3'
miRNA:   3'- gGCA---CUGGUGGCGCUCGG-CGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 57986 0.68 0.495056
Target:  5'- aUCGUGACC-CCGguCGAGCCaGCGACc-- -3'
miRNA:   3'- -GGCACUGGuGGC--GCUCGG-CGUUGccg -5'
23399 3' -58.8 NC_005259.1 + 56905 0.72 0.313187
Target:  5'- gCGUGGCCGCCgcagcagGCGuGCCcGCGuCGGUg -3'
miRNA:   3'- gGCACUGGUGG-------CGCuCGG-CGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 56569 0.69 0.428971
Target:  5'- uCgGUGAUCGUCGCG-GCUGCGAUGaGCg -3'
miRNA:   3'- -GgCACUGGUGGCGCuCGGCGUUGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 56368 0.73 0.247049
Target:  5'- gCGguacaGCCGUCGCGGGCCGCGuCGGCu -3'
miRNA:   3'- gGCac---UGGUGGCGCUCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 56099 0.66 0.652627
Target:  5'- gUCGgGGCCACCGCGuGGCCaccgaaacugugugcGCugcCGGUg -3'
miRNA:   3'- -GGCaCUGGUGGCGC-UCGG---------------CGuu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 55706 0.66 0.627608
Target:  5'- cUCGuUGAUgGCCGCGAGCaccuCGCccuuguUGGCa -3'
miRNA:   3'- -GGC-ACUGgUGGCGCUCG----GCGuu----GCCG- -5'
23399 3' -58.8 NC_005259.1 + 53713 0.7 0.393619
Target:  5'- aCGUGGUCACCGC--GCCGCuGAUGGUg -3'
miRNA:   3'- gGCACUGGUGGCGcuCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 53666 0.7 0.376666
Target:  5'- gCCGaGGCCcCaCGCGGGCauCGCGAUGGUg -3'
miRNA:   3'- -GGCaCUGGuG-GCGCUCG--GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 53257 0.68 0.504881
Target:  5'- aCCGUcGCCGCCGCugucGCCGguGCcGCc -3'
miRNA:   3'- -GGCAcUGGUGGCGcu--CGGCguUGcCG- -5'
23399 3' -58.8 NC_005259.1 + 53040 0.67 0.555145
Target:  5'- aUCGUGACC-UCGCGGgaaauuGCUGCGugACGGg -3'
miRNA:   3'- -GGCACUGGuGGCGCU------CGGCGU--UGCCg -5'
23399 3' -58.8 NC_005259.1 + 52951 0.69 0.475675
Target:  5'- cCCGUaagcacCCGCCGCugcccGGCUGCAuCGGCa -3'
miRNA:   3'- -GGCAcu----GGUGGCGc----UCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 52615 0.75 0.192417
Target:  5'- aCgGUGGCCAacuaCGuCGAGCUGCGuCGGCu -3'
miRNA:   3'- -GgCACUGGUg---GC-GCUCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 51023 0.69 0.438098
Target:  5'- gUCGUG-CUACCGaCGAGCgGCG--GGCa -3'
miRNA:   3'- -GGCACuGGUGGC-GCUCGgCGUugCCG- -5'
23399 3' -58.8 NC_005259.1 + 50907 0.72 0.306656
Target:  5'- gCGUGcgauAgCGCCGCauGAGCCGCAcccacacgaACGGCu -3'
miRNA:   3'- gGCAC----UgGUGGCG--CUCGGCGU---------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 49541 0.69 0.428971
Target:  5'- aCGUGGCCACCucagugcCGGGCUGUucguCGGUc -3'
miRNA:   3'- gGCACUGGUGGc------GCUCGGCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 48460 0.7 0.419958
Target:  5'- gCGUu-CCACCGCGcgccgGGUCGCGuCGGCc -3'
miRNA:   3'- gGCAcuGGUGGCGC-----UCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 48421 0.72 0.292517
Target:  5'- aCCGcGACCGCCaccacCGAGgCGCGaggcaGCGGCa -3'
miRNA:   3'- -GGCaCUGGUGGc----GCUCgGCGU-----UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 48049 0.69 0.428971
Target:  5'- cCCgGUGGCCACgGCGGguagcGCCGCcgcgcccugagcGAUGGUg -3'
miRNA:   3'- -GG-CACUGGUGgCGCU-----CGGCG------------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 47959 0.72 0.306656
Target:  5'- gCCGaUGGCCGCCGCGccGCCcGCGAauaugccgGGCa -3'
miRNA:   3'- -GGC-ACUGGUGGCGCu-CGG-CGUUg-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.