miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 47822 0.76 0.164965
Target:  5'- cUCGcgGGCCACCGCu-GCCGCuGACGGUg -3'
miRNA:   3'- -GGCa-CUGGUGGCGcuCGGCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 47142 0.66 0.605729
Target:  5'- aUCGUgGGCCACaacguGCGcAGCagaucacCGUAGCGGCg -3'
miRNA:   3'- -GGCA-CUGGUGg----CGC-UCG-------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 47042 0.67 0.565387
Target:  5'- gCCGggGAUCugCGCGAGCguguuggugaGCGA-GGCg -3'
miRNA:   3'- -GGCa-CUGGugGCGCUCGg---------CGUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 46512 0.66 0.617183
Target:  5'- gUCGUacGAUC-CCGCGAGCCGgu-CGGg -3'
miRNA:   3'- -GGCA--CUGGuGGCGCUCGGCguuGCCg -5'
23399 3' -58.8 NC_005259.1 + 46432 0.66 0.627608
Target:  5'- cCCGUGACgAUgGUGgcaAGCUGCugcuCGGUg -3'
miRNA:   3'- -GGCACUGgUGgCGC---UCGGCGuu--GCCG- -5'
23399 3' -58.8 NC_005259.1 + 46336 0.76 0.178223
Target:  5'- gCGUcGCgCACCGCuuguagguucuGGGCCGCGAUGGCa -3'
miRNA:   3'- gGCAcUG-GUGGCG-----------CUCGGCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 46295 0.73 0.247049
Target:  5'- gCGgGGCCGCCGUG-GCUGCGuuguucGCGGCc -3'
miRNA:   3'- gGCaCUGGUGGCGCuCGGCGU------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 45509 0.85 0.043948
Target:  5'- gCUGUGGCCACCGCGccgguguuGGCCGCcgUGGCu -3'
miRNA:   3'- -GGCACUGGUGGCGC--------UCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 45394 0.66 0.606769
Target:  5'- cUCGgGGUCGCCGcCGAGCgCGCuGAUGGCc -3'
miRNA:   3'- -GGCaCUGGUGGC-GCUCG-GCG-UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 45336 0.73 0.247049
Target:  5'- gCGUGGCCugCGCcgccuGGGCCGCcgcguagucGACGGg -3'
miRNA:   3'- gGCACUGGugGCG-----CUCGGCG---------UUGCCg -5'
23399 3' -58.8 NC_005259.1 + 45004 0.7 0.402279
Target:  5'- aCCGccGACCGCCG-GGGCCGCG-CcGCc -3'
miRNA:   3'- -GGCa-CUGGUGGCgCUCGGCGUuGcCG- -5'
23399 3' -58.8 NC_005259.1 + 43710 0.67 0.544958
Target:  5'- aCCGcgcGACCGCauCGAGUCGaUGGCGGCc -3'
miRNA:   3'- -GGCa--CUGGUGgcGCUCGGC-GUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 42495 0.68 0.524774
Target:  5'- gCCGUGACCcguCCgGCGguguGGCCaGCAGCcguccGGCc -3'
miRNA:   3'- -GGCACUGGu--GG-CGC----UCGG-CGUUG-----CCG- -5'
23399 3' -58.8 NC_005259.1 + 41686 0.84 0.046323
Target:  5'- gCGUGGCCACCGCGcacacaggcaugcAGCCGCcgcauaccGGCGGCg -3'
miRNA:   3'- gGCACUGGUGGCGC-------------UCGGCG--------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 41475 0.72 0.306656
Target:  5'- cCCGUGA-CGCCGuCGAGCaCGaccuCGGCg -3'
miRNA:   3'- -GGCACUgGUGGC-GCUCG-GCguu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 40456 0.67 0.584974
Target:  5'- gCCGgugugguUGACgUACUGcCGGGCCGC-GCGGUu -3'
miRNA:   3'- -GGC-------ACUG-GUGGC-GCUCGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 39516 0.66 0.648461
Target:  5'- gCCGcUGGCCACCagucCG-GCC-CAACGuGCg -3'
miRNA:   3'- -GGC-ACUGGUGGc---GCuCGGcGUUGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 39446 0.68 0.495056
Target:  5'- gCGUGAUCggACCggagaaaacugGCGAGCCGUcgucGCGGUa -3'
miRNA:   3'- gGCACUGG--UGG-----------CGCUCGGCGu---UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 38952 0.72 0.306656
Target:  5'- gCCGcuGCCGCCGaGAGCCuGCAcgAUGGCa -3'
miRNA:   3'- -GGCacUGGUGGCgCUCGG-CGU--UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 38744 0.67 0.544958
Target:  5'- nCgGUGGcCCGCCGCaggccgguGAGCUGCGcgaucauguCGGCg -3'
miRNA:   3'- -GgCACU-GGUGGCG--------CUCGGCGUu--------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.