miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 38720 0.74 0.229427
Target:  5'- --uUGACCACCGCugccGCCGUAcCGGCg -3'
miRNA:   3'- ggcACUGGUGGCGcu--CGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37725 0.66 0.615099
Target:  5'- cCCGaggcaccGCCGCCGaCGAGCUGCucgaugaccagcGCGGUg -3'
miRNA:   3'- -GGCac-----UGGUGGC-GCUCGGCGu-----------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37655 0.74 0.241054
Target:  5'- aCCGccGCCGCCGcCGGuGCCGCcACGGUu -3'
miRNA:   3'- -GGCacUGGUGGC-GCU-CGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37239 0.68 0.524774
Target:  5'- cCCGUGccggauuggcuGCCGCCGUugccaggcuuGAgGCCGCc-CGGCa -3'
miRNA:   3'- -GGCAC-----------UGGUGGCG----------CU-CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37208 0.7 0.411059
Target:  5'- gCCGccACCGCCGCc-GCCGCcGgGGCg -3'
miRNA:   3'- -GGCacUGGUGGCGcuCGGCGuUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 37157 0.74 0.241054
Target:  5'- gCCGUcACCGCCGCGcccgccgacGCCGCGcgaggacgagcuGCGGCc -3'
miRNA:   3'- -GGCAcUGGUGGCGCu--------CGGCGU------------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 36951 0.74 0.229427
Target:  5'- aCCGggGugC-CCGCGAGaCCGCcuCGGCc -3'
miRNA:   3'- -GGCa-CugGuGGCGCUC-GGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 36233 0.74 0.218277
Target:  5'- aCCuUGGCCAgCGCGAGCgccUGCGuCGGCa -3'
miRNA:   3'- -GGcACUGGUgGCGCUCG---GCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 35961 0.67 0.574646
Target:  5'- aCGUGACCguggucgcugucaACgGCGGGaaaC-CGACGGCg -3'
miRNA:   3'- gGCACUGG-------------UGgCGCUCg--GcGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 35896 0.67 0.565387
Target:  5'- ---aGACCACgGCGAGCCauucuGCGuugcGCGGg -3'
miRNA:   3'- ggcaCUGGUGgCGCUCGG-----CGU----UGCCg -5'
23399 3' -58.8 NC_005259.1 + 35867 0.71 0.352175
Target:  5'- gCCGcGuCCACCGC-AGCCGCcGCcgaGGCa -3'
miRNA:   3'- -GGCaCuGGUGGCGcUCGGCGuUG---CCG- -5'
23399 3' -58.8 NC_005259.1 + 35634 0.7 0.393619
Target:  5'- uUCG-GGCCGCCGCcgcuGCCGC--UGGCg -3'
miRNA:   3'- -GGCaCUGGUGGCGcu--CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33990 0.67 0.596375
Target:  5'- gCCGgguaUGCgGUGAGCUGCAAcCGGCu -3'
miRNA:   3'- -GGCacugGUGgCGCUCGGCGUU-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 33878 0.66 0.617183
Target:  5'- uCgGUGAgCACaCGCGGGaaccacccgCGCGACGGg -3'
miRNA:   3'- -GgCACUgGUG-GCGCUCg--------GCGUUGCCg -5'
23399 3' -58.8 NC_005259.1 + 33589 0.75 0.192417
Target:  5'- gUCGcgGGCCACCGaggcgcgguCGAGCUGCAAcCGGCc -3'
miRNA:   3'- -GGCa-CUGGUGGC---------GCUCGGCGUU-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 33453 0.66 0.648461
Target:  5'- gUGUGACCcacguGCCGgGugucuggacuGCCGC-ACGGUa -3'
miRNA:   3'- gGCACUGG-----UGGCgCu---------CGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33405 0.72 0.285641
Target:  5'- gCCGUGuCCACCGCGcguacGCCuccCAgcGCGGCu -3'
miRNA:   3'- -GGCACuGGUGGCGCu----CGGc--GU--UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33080 0.67 0.552083
Target:  5'- uCCGcUGGCCAccuguagguaggcCCGCGAGCgUGCcuguagggccacGCGGCa -3'
miRNA:   3'- -GGC-ACUGGU-------------GGCGCUCG-GCGu-----------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 32550 0.68 0.501924
Target:  5'- gCUGuUGGCCGCCccgGCGAGCgCggggauagcguuggGCAGCGGUu -3'
miRNA:   3'- -GGC-ACUGGUGG---CGCUCG-G--------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 30708 0.7 0.419958
Target:  5'- gCGUGuuguuGCCGCCGaCGcGCCGCA-CGaGCg -3'
miRNA:   3'- gGCAC-----UGGUGGC-GCuCGGCGUuGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.