Results 81 - 100 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23399 | 3' | -58.8 | NC_005259.1 | + | 30018 | 0.67 | 0.544958 |
Target: 5'- -gGUGACCACC----GCCGgGGCGGUg -3' miRNA: 3'- ggCACUGGUGGcgcuCGGCgUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 29934 | 0.73 | 0.247049 |
Target: 5'- gCGUGGCCGCCacGCGgcccGGUCGCGGCuGGUg -3' miRNA: 3'- gGCACUGGUGG--CGC----UCGGCGUUG-CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 29341 | 0.67 | 0.565387 |
Target: 5'- cCCaUGACCACCacCGAGaCCGCcgucgaGGCa -3' miRNA: 3'- -GGcACUGGUGGc-GCUC-GGCGuug---CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 29038 | 0.71 | 0.336485 |
Target: 5'- aCCcUGACCAacgaCGaGAGCCGCGagcGCGGUa -3' miRNA: 3'- -GGcACUGGUg---GCgCUCGGCGU---UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 28973 | 0.7 | 0.411059 |
Target: 5'- uCgGUG-CCgagGCCGCGAGCgccCGCuACGGCc -3' miRNA: 3'- -GgCACuGG---UGGCGCUCG---GCGuUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 28222 | 0.67 | 0.586009 |
Target: 5'- gUCGUGccGCCACCGUcGGCgGCGG-GGUg -3' miRNA: 3'- -GGCAC--UGGUGGCGcUCGgCGUUgCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 27910 | 0.73 | 0.259411 |
Target: 5'- gCCGaGACCG-CGCGGGUgGUAGCGGUu -3' miRNA: 3'- -GGCaCUGGUgGCGCUCGgCGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 27383 | 0.74 | 0.229427 |
Target: 5'- aCgGUGACCgGCgGCGGuGUCgGCAGCGGCg -3' miRNA: 3'- -GgCACUGG-UGgCGCU-CGG-CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 27270 | 0.67 | 0.544958 |
Target: 5'- aCCGauacGCCGCCuuGAGCCGCcGCuGCa -3' miRNA: 3'- -GGCac--UGGUGGcgCUCGGCGuUGcCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 26489 | 0.7 | 0.385081 |
Target: 5'- gUCGcgGAaCGCCGCGAGCuCGCcgccCGGCg -3' miRNA: 3'- -GGCa-CUgGUGGCGCUCG-GCGuu--GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 25902 | 0.69 | 0.475675 |
Target: 5'- uCCGaggaUGGCCGCC-UGAGCCGCcGCcGCc -3' miRNA: 3'- -GGC----ACUGGUGGcGCUCGGCGuUGcCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 25526 | 0.68 | 0.485319 |
Target: 5'- aCCGUGG-CAUCGCGuggguGCUGgGACGGa -3' miRNA: 3'- -GGCACUgGUGGCGCu----CGGCgUUGCCg -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 25418 | 0.69 | 0.447334 |
Target: 5'- aCCGgGACgGCgaggucgaggaaUGCGAGCCGUAugagguCGGCg -3' miRNA: 3'- -GGCaCUGgUG------------GCGCUCGGCGUu-----GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 24225 | 0.7 | 0.411059 |
Target: 5'- aCGUGACCGgCG-GGGCCGa---GGCa -3' miRNA: 3'- gGCACUGGUgGCgCUCGGCguugCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 23888 | 0.68 | 0.485319 |
Target: 5'- uCCGcuGCCGCC-CGAGCCGCcGCGcccGCc -3' miRNA: 3'- -GGCacUGGUGGcGCUCGGCGuUGC---CG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 23350 | 0.67 | 0.544958 |
Target: 5'- cUCGaGGCUGCCuGCGAgGCCGCcgaGGCa -3' miRNA: 3'- -GGCaCUGGUGG-CGCU-CGGCGuugCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 23260 | 0.66 | 0.606769 |
Target: 5'- gCgGUGGCCACCaUGAGCaccaagaccgggCGCggUGGUu -3' miRNA: 3'- -GgCACUGGUGGcGCUCG------------GCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 22670 | 0.68 | 0.503895 |
Target: 5'- gCCGacgcacUGACCGCCGcCGAuuuccccgccgucGCCGuCAcCGGCu -3' miRNA: 3'- -GGC------ACUGGUGGC-GCU-------------CGGC-GUuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 22613 | 0.69 | 0.428971 |
Target: 5'- gCCGccGACCGCCGCccGAucaucuucGCCGCGuCGGUc -3' miRNA: 3'- -GGCa-CUGGUGGCG--CU--------CGGCGUuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 22208 | 0.79 | 0.114163 |
Target: 5'- aCGuUGGCCACCGCGcaccGCCGCGA-GGCu -3' miRNA: 3'- gGC-ACUGGUGGCGCu---CGGCGUUgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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