miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 20468 0.66 0.636994
Target:  5'- cUCGgaUGACCGCCGuCGAccucgacaccGCCcggcagcucaucgGCGACGGUg -3'
miRNA:   3'- -GGC--ACUGGUGGC-GCU----------CGG-------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 20162 0.8 0.084923
Target:  5'- gCCcUGGCCACCGCGcccGCCGCcuCGGCu -3'
miRNA:   3'- -GGcACUGGUGGCGCu--CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 20102 0.75 0.202423
Target:  5'- cCCGUGgugaGCCGCCGUcucaaGGCCGCAcUGGCu -3'
miRNA:   3'- -GGCAC----UGGUGGCGc----UCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 20043 0.67 0.596375
Target:  5'- aCCGUcaAgCGCUGCGAuguccGCUGCggUGGCg -3'
miRNA:   3'- -GGCAc-UgGUGGCGCU-----CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 19948 0.66 0.638037
Target:  5'- gCGUGugCGuCCGCaacGGCgGCu-CGGCg -3'
miRNA:   3'- gGCACugGU-GGCGc--UCGgCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 19828 0.69 0.428971
Target:  5'- aCCcUGAUCAUCGCGGcugcuGCCGCGcuCGGUg -3'
miRNA:   3'- -GGcACUGGUGGCGCU-----CGGCGUu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 19377 0.69 0.447334
Target:  5'- cCCGcUGAUCACCG---GCCcCAACGGCa -3'
miRNA:   3'- -GGC-ACUGGUGGCgcuCGGcGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 19249 0.71 0.368376
Target:  5'- aUCGaUGGCCGCCuGcCGGGCCGCccGAUGGa -3'
miRNA:   3'- -GGC-ACUGGUGG-C-GCUCGGCG--UUGCCg -5'
23399 3' -58.8 NC_005259.1 + 17858 0.66 0.638037
Target:  5'- cCCGUGGUCAgCGauccuuGAGCCGCu-CGGUu -3'
miRNA:   3'- -GGCACUGGUgGCg-----CUCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 17755 0.75 0.212877
Target:  5'- uCCGUGagGCCGCCGCGcGCCGgGcCGaGCg -3'
miRNA:   3'- -GGCAC--UGGUGGCGCuCGGCgUuGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 17503 0.66 0.627608
Target:  5'- aCGgcGACCuuGCCGaucCGAGCUcgugggcacacaGCGACGGCg -3'
miRNA:   3'- gGCa-CUGG--UGGC---GCUCGG------------CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 16453 0.66 0.648461
Target:  5'- aCCGUcGGcaucgguaccCCGCCGCaGAucGCCGuCAAgGGCg -3'
miRNA:   3'- -GGCA-CU----------GGUGGCG-CU--CGGC-GUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 15991 0.72 0.292517
Target:  5'- -aGUGAUCACCGCcgguGGCCGCAuccugcCGGUu -3'
miRNA:   3'- ggCACUGGUGGCGc---UCGGCGUu-----GCCG- -5'
23399 3' -58.8 NC_005259.1 + 15579 0.75 0.187579
Target:  5'- cUCGgGGCCAgCGCGAcggGCCGCAugagcuACGGCa -3'
miRNA:   3'- -GGCaCUGGUgGCGCU---CGGCGU------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 15300 0.66 0.617183
Target:  5'- aCCGccGACCucGCCGCccacGGUCuCGACGGCg -3'
miRNA:   3'- -GGCa-CUGG--UGGCGc---UCGGcGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 15066 0.69 0.45106
Target:  5'- aCCGUGGCCACCcugGCccuugagccggucauGcGCCGCAG-GGCc -3'
miRNA:   3'- -GGCACUGGUGG---CG---------------CuCGGCGUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 14005 0.72 0.313919
Target:  5'- ---aGACCACCuuGAGUCGCugcccGACGGCa -3'
miRNA:   3'- ggcaCUGGUGGcgCUCGGCG-----UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13829 0.66 0.617183
Target:  5'- gCGUGAUgACCGaCGGGCacauuGCc-CGGCg -3'
miRNA:   3'- gGCACUGgUGGC-GCUCGg----CGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13735 0.68 0.502909
Target:  5'- gCCGUGAUgGcCCGCGAGauaugccaagaccUCGCcgacgacguguucGACGGCg -3'
miRNA:   3'- -GGCACUGgU-GGCGCUC-------------GGCG-------------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 13617 0.7 0.376666
Target:  5'- aCGgcaACCACaucuGCGGGCCGCucaacgucGACGGCu -3'
miRNA:   3'- gGCac-UGGUGg---CGCUCGGCG--------UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.