miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 56099 0.66 0.652627
Target:  5'- gUCGgGGCCACCGCGuGGCCaccgaaacugugugcGCugcCGGUg -3'
miRNA:   3'- -GGCaCUGGUGGCGC-UCGG---------------CGuu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 52615 0.75 0.192417
Target:  5'- aCgGUGGCCAacuaCGuCGAGCUGCGuCGGCu -3'
miRNA:   3'- -GgCACUGGUg---GC-GCUCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33589 0.75 0.192417
Target:  5'- gUCGcgGGCCACCGaggcgcgguCGAGCUGCAAcCGGCc -3'
miRNA:   3'- -GGCa-CUGGUGGC---------GCUCGGCGUU-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 20102 0.75 0.202423
Target:  5'- cCCGUGgugaGCCGCCGUcucaaGGCCGCAcUGGCu -3'
miRNA:   3'- -GGCAC----UGGUGGCGc----UCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 17755 0.75 0.212877
Target:  5'- uCCGUGagGCCGCCGCGcGCCGgGcCGaGCg -3'
miRNA:   3'- -GGCAC--UGGUGGCGCuCGGCgUuGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 36233 0.74 0.218277
Target:  5'- aCCuUGGCCAgCGCGAGCgccUGCGuCGGCa -3'
miRNA:   3'- -GGcACUGGUgGCGCUCG---GCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 27383 0.74 0.229427
Target:  5'- aCgGUGACCgGCgGCGGuGUCgGCAGCGGCg -3'
miRNA:   3'- -GgCACUGG-UGgCGCU-CGG-CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 38720 0.74 0.229427
Target:  5'- --uUGACCACCGCugccGCCGUAcCGGCg -3'
miRNA:   3'- ggcACUGGUGGCGcu--CGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 36951 0.74 0.229427
Target:  5'- aCCGggGugC-CCGCGAGaCCGCcuCGGCc -3'
miRNA:   3'- -GGCa-CugGuGGCGCUC-GGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 15579 0.75 0.187579
Target:  5'- cUCGgGGCCAgCGCGAcggGCCGCAugagcuACGGCa -3'
miRNA:   3'- -GGCaCUGGUgGCGCU---CGGCGU------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 46336 0.76 0.178223
Target:  5'- gCGUcGCgCACCGCuuguagguucuGGGCCGCGAUGGCa -3'
miRNA:   3'- gGCAcUG-GUGGCG-----------CUCGGCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 7384 0.76 0.169283
Target:  5'- cUCGgGACagacCCGCGAGacCCGCAACGGCa -3'
miRNA:   3'- -GGCaCUGgu--GGCGCUC--GGCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 41686 0.84 0.046323
Target:  5'- gCGUGGCCACCGCGcacacaggcaugcAGCCGCcgcauaccGGCGGCg -3'
miRNA:   3'- gGCACUGGUGGCGC-------------UCGGCG--------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 67984 0.83 0.060202
Target:  5'- gCGUGGCCaccGCCGCGAGCgucgacuugcccuccUGCGGCGGCa -3'
miRNA:   3'- gGCACUGG---UGGCGCUCG---------------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 20162 0.8 0.084923
Target:  5'- gCCcUGGCCACCGCGcccGCCGCcuCGGCu -3'
miRNA:   3'- -GGcACUGGUGGCGCu--CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 67136 0.79 0.102576
Target:  5'- gCGUGAgcaCCGCUGUGAGCCGCuugucgaugguGGCGGCc -3'
miRNA:   3'- gGCACU---GGUGGCGCUCGGCG-----------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 22208 0.79 0.114163
Target:  5'- aCGuUGGCCACCGCGcaccGCCGCGA-GGCu -3'
miRNA:   3'- gGC-ACUGGUGGCGCu---CGGCGUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 3968 0.77 0.152601
Target:  5'- uCUG-GACCugagcggucCCGCGAGCaCGCGAUGGCg -3'
miRNA:   3'- -GGCaCUGGu--------GGCGCUCG-GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 64421 0.76 0.160747
Target:  5'- gCCGUGAgggaUCGCCGaCGAGCUGCcGgGGCg -3'
miRNA:   3'- -GGCACU----GGUGGC-GCUCGGCGuUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 47822 0.76 0.164965
Target:  5'- cUCGcgGGCCACCGCu-GCCGCuGACGGUg -3'
miRNA:   3'- -GGCa-CUGGUGGCGcuCGGCG-UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.