miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 22208 0.79 0.114163
Target:  5'- aCGuUGGCCACCGCGcaccGCCGCGA-GGCu -3'
miRNA:   3'- gGC-ACUGGUGGCGCu---CGGCGUUgCCG- -5'
23399 3' -58.8 NC_005259.1 + 67136 0.79 0.102576
Target:  5'- gCGUGAgcaCCGCUGUGAGCCGCuugucgaugguGGCGGCc -3'
miRNA:   3'- gGCACU---GGUGGCGCUCGGCG-----------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 20162 0.8 0.084923
Target:  5'- gCCcUGGCCACCGCGcccGCCGCcuCGGCu -3'
miRNA:   3'- -GGcACUGGUGGCGCu--CGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 67984 0.83 0.060202
Target:  5'- gCGUGGCCaccGCCGCGAGCgucgacuugcccuccUGCGGCGGCa -3'
miRNA:   3'- gGCACUGG---UGGCGCUCG---------------GCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 41686 0.84 0.046323
Target:  5'- gCGUGGCCACCGCGcacacaggcaugcAGCCGCcgcauaccGGCGGCg -3'
miRNA:   3'- gGCACUGGUGGCGC-------------UCGGCG--------UUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 20102 0.75 0.202423
Target:  5'- cCCGUGgugaGCCGCCGUcucaaGGCCGCAcUGGCu -3'
miRNA:   3'- -GGCAC----UGGUGGCGc----UCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 17755 0.75 0.212877
Target:  5'- uCCGUGagGCCGCCGCGcGCCGgGcCGaGCg -3'
miRNA:   3'- -GGCAC--UGGUGGCGCuCGGCgUuGC-CG- -5'
23399 3' -58.8 NC_005259.1 + 59388 0.73 0.278225
Target:  5'- aCCGUGccuCCGCgCGCGAGCgugaccuCGCGcAUGGCg -3'
miRNA:   3'- -GGCACu--GGUG-GCGCUCG-------GCGU-UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 27910 0.73 0.259411
Target:  5'- gCCGaGACCG-CGCGGGUgGUAGCGGUu -3'
miRNA:   3'- -GGCaCUGGUgGCGCUCGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 10735 0.73 0.253168
Target:  5'- uCgGUGAUCACCGCGcGCUGCcg-GGCg -3'
miRNA:   3'- -GgCACUGGUGGCGCuCGGCGuugCCG- -5'
23399 3' -58.8 NC_005259.1 + 56368 0.73 0.247049
Target:  5'- gCGguacaGCCGUCGCGGGCCGCGuCGGCu -3'
miRNA:   3'- gGCac---UGGUGGCGCUCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 46295 0.73 0.247049
Target:  5'- gCGgGGCCGCCGUG-GCUGCGuuguucGCGGCc -3'
miRNA:   3'- gGCaCUGGUGGCGCuCGGCGU------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 45336 0.73 0.247049
Target:  5'- gCGUGGCCugCGCcgccuGGGCCGCcgcguagucGACGGg -3'
miRNA:   3'- gGCACUGGugGCG-----CUCGGCG---------UUGCCg -5'
23399 3' -58.8 NC_005259.1 + 29934 0.73 0.247049
Target:  5'- gCGUGGCCGCCacGCGgcccGGUCGCGGCuGGUg -3'
miRNA:   3'- gGCACUGGUGG--CGC----UCGGCGUUG-CCG- -5'
23399 3' -58.8 NC_005259.1 + 37655 0.74 0.241054
Target:  5'- aCCGccGCCGCCGcCGGuGCCGCcACGGUu -3'
miRNA:   3'- -GGCacUGGUGGC-GCU-CGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37157 0.74 0.241054
Target:  5'- gCCGUcACCGCCGCGcccgccgacGCCGCGcgaggacgagcuGCGGCc -3'
miRNA:   3'- -GGCAcUGGUGGCGCu--------CGGCGU------------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 36951 0.74 0.229427
Target:  5'- aCCGggGugC-CCGCGAGaCCGCcuCGGCc -3'
miRNA:   3'- -GGCa-CugGuGGCGCUC-GGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 38720 0.74 0.229427
Target:  5'- --uUGACCACCGCugccGCCGUAcCGGCg -3'
miRNA:   3'- ggcACUGGUGGCGcu--CGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 27383 0.74 0.229427
Target:  5'- aCgGUGACCgGCgGCGGuGUCgGCAGCGGCg -3'
miRNA:   3'- -GgCACUGG-UGgCGCU-CGG-CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 36233 0.74 0.218277
Target:  5'- aCCuUGGCCAgCGCGAGCgccUGCGuCGGCa -3'
miRNA:   3'- -GGcACUGGUgGCGCUCG---GCGUuGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.