miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23399 3' -58.8 NC_005259.1 + 36951 0.74 0.229427
Target:  5'- aCCGggGugC-CCGCGAGaCCGCcuCGGCc -3'
miRNA:   3'- -GGCa-CugGuGGCGCUC-GGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37157 0.74 0.241054
Target:  5'- gCCGUcACCGCCGCGcccgccgacGCCGCGcgaggacgagcuGCGGCc -3'
miRNA:   3'- -GGCAcUGGUGGCGCu--------CGGCGU------------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 15991 0.72 0.292517
Target:  5'- -aGUGAUCACCGCcgguGGCCGCAuccugcCGGUu -3'
miRNA:   3'- ggCACUGGUGGCGc---UCGGCGUu-----GCCG- -5'
23399 3' -58.8 NC_005259.1 + 48421 0.72 0.292517
Target:  5'- aCCGcGACCGCCaccacCGAGgCGCGaggcaGCGGCa -3'
miRNA:   3'- -GGCaCUGGUGGc----GCUCgGCGU-----UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 9524 0.72 0.299522
Target:  5'- gCGUcGACCGCCGCcgggucaccggaGAGCUGCc-CGGCc -3'
miRNA:   3'- gGCA-CUGGUGGCG------------CUCGGCGuuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 47959 0.72 0.306656
Target:  5'- gCCGaUGGCCGCCGCGccGCCcGCGAauaugccgGGCa -3'
miRNA:   3'- -GGC-ACUGGUGGCGCu-CGG-CGUUg-------CCG- -5'
23399 3' -58.8 NC_005259.1 + 38952 0.72 0.306656
Target:  5'- gCCGcuGCCGCCGaGAGCCuGCAcgAUGGCa -3'
miRNA:   3'- -GGCacUGGUGGCgCUCGG-CGU--UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 50907 0.72 0.306656
Target:  5'- gCGUGcgauAgCGCCGCauGAGCCGCAcccacacgaACGGCu -3'
miRNA:   3'- gGCAC----UgGUGGCG--CUCGGCGU---------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 41475 0.72 0.306656
Target:  5'- cCCGUGA-CGCCGuCGAGCaCGaccuCGGCg -3'
miRNA:   3'- -GGCACUgGUGGC-GCUCG-GCguu-GCCG- -5'
23399 3' -58.8 NC_005259.1 + 56905 0.72 0.313187
Target:  5'- gCGUGGCCGCCgcagcagGCGuGCCcGCGuCGGUg -3'
miRNA:   3'- gGCACUGGUGG-------CGCuCGG-CGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 3597 0.72 0.285641
Target:  5'- aCCGcacUGuCCAucCUGCGGGCCuaccGCAACGGCu -3'
miRNA:   3'- -GGC---ACuGGU--GGCGCUCGG----CGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 33405 0.72 0.285641
Target:  5'- gCCGUGuCCACCGCGcguacGCCuccCAgcGCGGCu -3'
miRNA:   3'- -GGCACuGGUGGCGCu----CGGc--GU--UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 37655 0.74 0.241054
Target:  5'- aCCGccGCCGCCGcCGGuGCCGCcACGGUu -3'
miRNA:   3'- -GGCacUGGUGGC-GCU-CGGCGuUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 29934 0.73 0.247049
Target:  5'- gCGUGGCCGCCacGCGgcccGGUCGCGGCuGGUg -3'
miRNA:   3'- gGCACUGGUGG--CGC----UCGGCGUUG-CCG- -5'
23399 3' -58.8 NC_005259.1 + 45336 0.73 0.247049
Target:  5'- gCGUGGCCugCGCcgccuGGGCCGCcgcguagucGACGGg -3'
miRNA:   3'- gGCACUGGugGCG-----CUCGGCG---------UUGCCg -5'
23399 3' -58.8 NC_005259.1 + 46295 0.73 0.247049
Target:  5'- gCGgGGCCGCCGUG-GCUGCGuuguucGCGGCc -3'
miRNA:   3'- gGCaCUGGUGGCGCuCGGCGU------UGCCG- -5'
23399 3' -58.8 NC_005259.1 + 56368 0.73 0.247049
Target:  5'- gCGguacaGCCGUCGCGGGCCGCGuCGGCu -3'
miRNA:   3'- gGCac---UGGUGGCGCUCGGCGUuGCCG- -5'
23399 3' -58.8 NC_005259.1 + 10735 0.73 0.253168
Target:  5'- uCgGUGAUCACCGCGcGCUGCcg-GGCg -3'
miRNA:   3'- -GgCACUGGUGGCGCuCGGCGuugCCG- -5'
23399 3' -58.8 NC_005259.1 + 27910 0.73 0.259411
Target:  5'- gCCGaGACCG-CGCGGGUgGUAGCGGUu -3'
miRNA:   3'- -GGCaCUGGUgGCGCUCGgCGUUGCCG- -5'
23399 3' -58.8 NC_005259.1 + 59388 0.73 0.278225
Target:  5'- aCCGUGccuCCGCgCGCGAGCgugaccuCGCGcAUGGCg -3'
miRNA:   3'- -GGCACu--GGUG-GCGCUCG-------GCGU-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.