Results 81 - 100 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23399 | 3' | -58.8 | NC_005259.1 | + | 13421 | 0.71 | 0.328834 |
Target: 5'- gCCGgggucGCCGCCG-GGGCCGCGcuaGGCg -3' miRNA: 3'- -GGCac---UGGUGGCgCUCGGCGUug-CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 29038 | 0.71 | 0.336485 |
Target: 5'- aCCcUGACCAacgaCGaGAGCCGCGagcGCGGUa -3' miRNA: 3'- -GGcACUGGUg---GCgCUCGGCGU---UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 35867 | 0.71 | 0.352175 |
Target: 5'- gCCGcGuCCACCGC-AGCCGCcGCcgaGGCa -3' miRNA: 3'- -GGCaCuGGUGGCGcUCGGCGuUG---CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 64750 | 0.71 | 0.352175 |
Target: 5'- cCCGc--CCACCGCGccUCGCGACGGUg -3' miRNA: 3'- -GGCacuGGUGGCGCucGGCGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 5533 | 0.71 | 0.367554 |
Target: 5'- gCUGUGGCUgcucucgcccgagGCCGCGuggGGUgGUGACGGCg -3' miRNA: 3'- -GGCACUGG-------------UGGCGC---UCGgCGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 19249 | 0.71 | 0.368376 |
Target: 5'- aUCGaUGGCCGCCuGcCGGGCCGCccGAUGGa -3' miRNA: 3'- -GGC-ACUGGUGG-C-GCUCGGCG--UUGCCg -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 60148 | 0.71 | 0.368376 |
Target: 5'- gCCuUGGCCGCCGCcucAGCgGCcucacgGGCGGCg -3' miRNA: 3'- -GGcACUGGUGGCGc--UCGgCG------UUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 56905 | 0.72 | 0.313187 |
Target: 5'- gCGUGGCCGCCgcagcagGCGuGCCcGCGuCGGUg -3' miRNA: 3'- gGCACUGGUGG-------CGCuCGG-CGUuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 41475 | 0.72 | 0.306656 |
Target: 5'- cCCGUGA-CGCCGuCGAGCaCGaccuCGGCg -3' miRNA: 3'- -GGCACUgGUGGC-GCUCG-GCguu-GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 50907 | 0.72 | 0.306656 |
Target: 5'- gCGUGcgauAgCGCCGCauGAGCCGCAcccacacgaACGGCu -3' miRNA: 3'- gGCAC----UgGUGGCG--CUCGGCGU---------UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 10735 | 0.73 | 0.253168 |
Target: 5'- uCgGUGAUCACCGCGcGCUGCcg-GGCg -3' miRNA: 3'- -GgCACUGGUGGCGCuCGGCGuugCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 27910 | 0.73 | 0.259411 |
Target: 5'- gCCGaGACCG-CGCGGGUgGUAGCGGUu -3' miRNA: 3'- -GGCaCUGGUgGCGCUCGgCGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 59388 | 0.73 | 0.278225 |
Target: 5'- aCCGUGccuCCGCgCGCGAGCgugaccuCGCGcAUGGCg -3' miRNA: 3'- -GGCACu--GGUG-GCGCUCG-------GCGU-UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 33405 | 0.72 | 0.285641 |
Target: 5'- gCCGUGuCCACCGCGcguacGCCuccCAgcGCGGCu -3' miRNA: 3'- -GGCACuGGUGGCGCu----CGGc--GU--UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 3597 | 0.72 | 0.285641 |
Target: 5'- aCCGcacUGuCCAucCUGCGGGCCuaccGCAACGGCu -3' miRNA: 3'- -GGC---ACuGGU--GGCGCUCGG----CGUUGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 15991 | 0.72 | 0.292517 |
Target: 5'- -aGUGAUCACCGCcgguGGCCGCAuccugcCGGUu -3' miRNA: 3'- ggCACUGGUGGCGc---UCGGCGUu-----GCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 48421 | 0.72 | 0.292517 |
Target: 5'- aCCGcGACCGCCaccacCGAGgCGCGaggcaGCGGCa -3' miRNA: 3'- -GGCaCUGGUGGc----GCUCgGCGU-----UGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 9524 | 0.72 | 0.299522 |
Target: 5'- gCGUcGACCGCCGCcgggucaccggaGAGCUGCc-CGGCc -3' miRNA: 3'- gGCA-CUGGUGGCG------------CUCGGCGuuGCCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 47959 | 0.72 | 0.306656 |
Target: 5'- gCCGaUGGCCGCCGCGccGCCcGCGAauaugccgGGCa -3' miRNA: 3'- -GGC-ACUGGUGGCGCu-CGG-CGUUg-------CCG- -5' |
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23399 | 3' | -58.8 | NC_005259.1 | + | 38952 | 0.72 | 0.306656 |
Target: 5'- gCCGcuGCCGCCGaGAGCCuGCAcgAUGGCa -3' miRNA: 3'- -GGCacUGGUGGCgCUCGG-CGU--UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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