miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2340 3' -50.5 NC_001416.1 + 38552 0.66 0.901458
Target:  5'- uCUCACCAaUAaaaaacgcCCGGcgGCAACCGa-- -3'
miRNA:   3'- -GAGUGGUaAU--------GGCCuaUGUUGGCcuu -5'
2340 3' -50.5 NC_001416.1 + 20476 0.66 0.894128
Target:  5'- -cCGCCGUUGCCGaGGaagcugcACGACCGGc- -3'
miRNA:   3'- gaGUGGUAAUGGC-CUa------UGUUGGCCuu -5'
2340 3' -50.5 NC_001416.1 + 4739 0.66 0.894128
Target:  5'- gCUgACCAgcgUGCCGGAcaccgGCAGCaCGGc- -3'
miRNA:   3'- -GAgUGGUa--AUGGCCUa----UGUUG-GCCuu -5'
2340 3' -50.5 NC_001416.1 + 8567 0.67 0.844226
Target:  5'- --aGCCG-UACUGGAUGC-ACUGGAGa -3'
miRNA:   3'- gagUGGUaAUGGCCUAUGuUGGCCUU- -5'
2340 3' -50.5 NC_001416.1 + 15753 0.69 0.764425
Target:  5'- gCUCACCAgc-CCGGA-ACAccaccgugacACCGGAu -3'
miRNA:   3'- -GAGUGGUaauGGCCUaUGU----------UGGCCUu -5'
2340 3' -50.5 NC_001416.1 + 40794 0.69 0.764425
Target:  5'- gUCGCUg--GCUGGAUGCAgaaaGCUGGAAg -3'
miRNA:   3'- gAGUGGuaaUGGCCUAUGU----UGGCCUU- -5'
2340 3' -50.5 NC_001416.1 + 4657 0.69 0.739417
Target:  5'- aUCGCCGUgcUGCCGGuguccggcacgcugGU-CAGCCGGAc -3'
miRNA:   3'- gAGUGGUA--AUGGCC--------------UAuGUUGGCCUu -5'
2340 3' -50.5 NC_001416.1 + 3359 0.7 0.716027
Target:  5'- -gCAUCAgcaacccgaacaaUACCGGcgACAGCCGGAAc -3'
miRNA:   3'- gaGUGGUa------------AUGGCCuaUGUUGGCCUU- -5'
2340 3' -50.5 NC_001416.1 + 8863 0.7 0.675059
Target:  5'- aUCGCuCAUcACCGGAUAaauCCGGGAc -3'
miRNA:   3'- gAGUG-GUAaUGGCCUAUguuGGCCUU- -5'
2340 3' -50.5 NC_001416.1 + 21744 0.71 0.66355
Target:  5'- gUCACuCAUUGuCCGG-UACAGCCGuGAGu -3'
miRNA:   3'- gAGUG-GUAAU-GGCCuAUGUUGGC-CUU- -5'
2340 3' -50.5 NC_001416.1 + 22217 0.71 0.613843
Target:  5'- aCUCGguCCGUUACCGGAaaauuuuaccugguUAUcGCCGGGAg -3'
miRNA:   3'- -GAGU--GGUAAUGGCCU--------------AUGuUGGCCUU- -5'
2340 3' -50.5 NC_001416.1 + 15086 0.79 0.238892
Target:  5'- -cCGCCAUUGCCGGAucauucuuUACcGCCGGAGc -3'
miRNA:   3'- gaGUGGUAAUGGCCU--------AUGuUGGCCUU- -5'
2340 3' -50.5 NC_001416.1 + 9695 1.07 0.003335
Target:  5'- aCUCACCAUUACCGGAUACAACCGGAAu -3'
miRNA:   3'- -GAGUGGUAAUGGCCUAUGUUGGCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.