miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2340 5' -55.3 NC_001416.1 + 2088 0.67 0.577826
Target:  5'- gGCCUcauccacacGCAGCAGCGuCUGUUCAuCGucGUGGc -3'
miRNA:   3'- -CGGA---------CGUCGUUGC-GGCAAGU-GC--CACU- -5'
2340 5' -55.3 NC_001416.1 + 3906 0.66 0.644383
Target:  5'- -gCUGCGGUAuaucGCuGCCGggCugGGUGu -3'
miRNA:   3'- cgGACGUCGU----UG-CGGCaaGugCCACu -5'
2340 5' -55.3 NC_001416.1 + 4728 0.68 0.54504
Target:  5'- uGCCggacaccgGCAGCAcggcgAUGCCGUUCAUGaccUGAu -3'
miRNA:   3'- -CGGa-------CGUCGU-----UGCGGCAAGUGCc--ACU- -5'
2340 5' -55.3 NC_001416.1 + 5647 0.7 0.412302
Target:  5'- gGCCagaaUGCGGCGG-GCCGUuuUCACGGUc- -3'
miRNA:   3'- -CGG----ACGUCGUUgCGGCA--AGUGCCAcu -5'
2340 5' -55.3 NC_001416.1 + 7165 0.7 0.421815
Target:  5'- aGCCaGCAGCAucaGCgGUgcugacugaaUCAUGGUGAa -3'
miRNA:   3'- -CGGaCGUCGUug-CGgCA----------AGUGCCACU- -5'
2340 5' -55.3 NC_001416.1 + 7826 0.67 0.598817
Target:  5'- -gCUGCGGCGuggagacACGCUGacCAuCGGUGAg -3'
miRNA:   3'- cgGACGUCGU-------UGCGGCaaGU-GCCACU- -5'
2340 5' -55.3 NC_001416.1 + 9659 1.11 0.000645
Target:  5'- uGCCUGCAGCAACGCCGUUCACGGUGAu -3'
miRNA:   3'- -CGGACGUCGUUGCGGCAAGUGCCACU- -5'
2340 5' -55.3 NC_001416.1 + 10834 0.71 0.402922
Target:  5'- cGCCUGCAagcuGCGugGCCacgu-CGGUGAa -3'
miRNA:   3'- -CGGACGU----CGUugCGGcaaguGCCACU- -5'
2340 5' -55.3 NC_001416.1 + 13828 0.66 0.644383
Target:  5'- aGCagUGCAGCGAa-CUGagCGCGGUGAg -3'
miRNA:   3'- -CGg-ACGUCGUUgcGGCaaGUGCCACU- -5'
2340 5' -55.3 NC_001416.1 + 20756 0.68 0.56684
Target:  5'- cGCUUGCuGCAACGCCaaagGCGGUu- -3'
miRNA:   3'- -CGGACGuCGUUGCGGcaagUGCCAcu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.