miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23400 3' -58.5 NC_005259.1 + 44835 0.66 0.640503
Target:  5'- aCGagaUCCGACACCGCGcccgagcagucgcUcagaccGGCGGCgaGAu -3'
miRNA:   3'- aGC---AGGCUGUGGCGC-------------A------CCGCCGaaCU- -5'
23400 3' -58.5 NC_005259.1 + 52138 0.66 0.620485
Target:  5'- cCGUCCGGCACCuCGccgaGGCaGGCa--- -3'
miRNA:   3'- aGCAGGCUGUGGcGCa---CCG-CCGaacu -5'
23400 3' -58.5 NC_005259.1 + 60945 0.66 0.620485
Target:  5'- aUCGUCUG-CACCacaugcGCGUccGGCGGCa--- -3'
miRNA:   3'- -AGCAGGCuGUGG------CGCA--CCGCCGaacu -5'
23400 3' -58.5 NC_005259.1 + 51114 0.66 0.608907
Target:  5'- cUGUCCGGCaggccaucagaucACCGuCGgGGCGGCcaUGAg -3'
miRNA:   3'- aGCAGGCUG-------------UGGC-GCaCCGCCGa-ACU- -5'
23400 3' -58.5 NC_005259.1 + 42526 0.66 0.59945
Target:  5'- cCGUCCGgccccgauggGCACCGagGUGGCgGGCa--- -3'
miRNA:   3'- aGCAGGC----------UGUGGCg-CACCG-CCGaacu -5'
23400 3' -58.5 NC_005259.1 + 26394 0.67 0.537194
Target:  5'- cUCGcgauUCCGACGCCggGCGcGGCGGUg--- -3'
miRNA:   3'- -AGC----AGGCUGUGG--CGCaCCGCCGaacu -5'
23400 3' -58.5 NC_005259.1 + 28222 0.68 0.527015
Target:  5'- gUCGUgCCGcCACCGUc-GGCGGCggggUGGu -3'
miRNA:   3'- -AGCA-GGCuGUGGCGcaCCGCCGa---ACU- -5'
23400 3' -58.5 NC_005259.1 + 27907 0.68 0.487083
Target:  5'- gUCG-CCGAgACCGCGcgGGUGGUa--- -3'
miRNA:   3'- -AGCaGGCUgUGGCGCa-CCGCCGaacu -5'
23400 3' -58.5 NC_005259.1 + 61746 0.69 0.458096
Target:  5'- gCGUCCGGCGagauCUGUGcGGCGGCa--- -3'
miRNA:   3'- aGCAGGCUGU----GGCGCaCCGCCGaacu -5'
23400 3' -58.5 NC_005259.1 + 66873 0.69 0.430057
Target:  5'- cUUGUUCG-CACCGCGccaCGGCUUGAu -3'
miRNA:   3'- -AGCAGGCuGUGGCGCaccGCCGAACU- -5'
23400 3' -58.5 NC_005259.1 + 67794 0.7 0.394291
Target:  5'- cUUGU-UGGCACCGCGU-GCGaGCUUGAg -3'
miRNA:   3'- -AGCAgGCUGUGGCGCAcCGC-CGAACU- -5'
23400 3' -58.5 NC_005259.1 + 23596 0.71 0.360508
Target:  5'- gCGUggcaCGGCAguuccCCGCGUGGCGGCa--- -3'
miRNA:   3'- aGCAg---GCUGU-----GGCGCACCGCCGaacu -5'
23400 3' -58.5 NC_005259.1 + 32086 0.72 0.31373
Target:  5'- cUCGUCCGAgaaACCGgGcGGUGGCggGAa -3'
miRNA:   3'- -AGCAGGCUg--UGGCgCaCCGCCGaaCU- -5'
23400 3' -58.5 NC_005259.1 + 5545 0.74 0.211855
Target:  5'- cUCGcCCGAgGCCGCGUGG-GGUggUGAc -3'
miRNA:   3'- -AGCaGGCUgUGGCGCACCgCCGa-ACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.