miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23400 5' -57.3 NC_005259.1 + 38022 0.66 0.657032
Target:  5'- uUGUCAGGCCcgcguugguGUACCCGGC-CAc--- -3'
miRNA:   3'- -ACAGUUCGGu--------CGUGGGCCGaGUucgc -5'
23400 5' -57.3 NC_005259.1 + 26501 0.66 0.646234
Target:  5'- cG-CGAGCUcGcCGCCCGGCgagaaGAGCGc -3'
miRNA:   3'- aCaGUUCGGuC-GUGGGCCGag---UUCGC- -5'
23400 5' -57.3 NC_005259.1 + 23324 0.66 0.646234
Target:  5'- gUGUCGccgAGCCGGauuaCAUCgGGCUCGAGg- -3'
miRNA:   3'- -ACAGU---UCGGUC----GUGGgCCGAGUUCgc -5'
23400 5' -57.3 NC_005259.1 + 1300 0.66 0.645153
Target:  5'- gGUCGAGCUcuacgcggucgugAGCGCCaUGGUcgauuucgagaUCGAGCGc -3'
miRNA:   3'- aCAGUUCGG-------------UCGUGG-GCCG-----------AGUUCGC- -5'
23400 5' -57.3 NC_005259.1 + 30518 0.66 0.635422
Target:  5'- gUGUUGAGCUcuuuAGCGCCCugcaugaucauGGCcacCGAGCGg -3'
miRNA:   3'- -ACAGUUCGG----UCGUGGG-----------CCGa--GUUCGC- -5'
23400 5' -57.3 NC_005259.1 + 45505 0.66 0.621365
Target:  5'- gGUCGcuguGGCCAccGCGCCgguguuggccgccgUGGCUgCGAGCGg -3'
miRNA:   3'- aCAGU----UCGGU--CGUGG--------------GCCGA-GUUCGC- -5'
23400 5' -57.3 NC_005259.1 + 5711 0.67 0.604087
Target:  5'- cGcCAAgGCCAGCGCCggaCGGCggccauucucgcggcCAAGCGg -3'
miRNA:   3'- aCaGUU-CGGUCGUGG---GCCGa--------------GUUCGC- -5'
23400 5' -57.3 NC_005259.1 + 41648 0.67 0.60301
Target:  5'- gGUCu-GCgGGCGCUCGGU--GAGCGg -3'
miRNA:   3'- aCAGuuCGgUCGUGGGCCGagUUCGC- -5'
23400 5' -57.3 NC_005259.1 + 11511 0.67 0.60301
Target:  5'- gGUCAGGCCAuC-CUCGGCggcAGCGa -3'
miRNA:   3'- aCAGUUCGGUcGuGGGCCGaguUCGC- -5'
23400 5' -57.3 NC_005259.1 + 63420 0.67 0.592241
Target:  5'- uUGcUCAuGCCgAGCAgCC-GCUCGGGCGa -3'
miRNA:   3'- -AC-AGUuCGG-UCGUgGGcCGAGUUCGC- -5'
23400 5' -57.3 NC_005259.1 + 58214 0.67 0.592241
Target:  5'- gUGUCAgGGUCAGUgGCCuCGaGCUCGGGCu -3'
miRNA:   3'- -ACAGU-UCGGUCG-UGG-GC-CGAGUUCGc -5'
23400 5' -57.3 NC_005259.1 + 49037 0.67 0.589017
Target:  5'- gGUCGAGUCGGCACggacgaugacgugaUCGGCgguuGGCGc -3'
miRNA:   3'- aCAGUUCGGUCGUG--------------GGCCGagu-UCGC- -5'
23400 5' -57.3 NC_005259.1 + 45219 0.67 0.570811
Target:  5'- cGUUGAGCCcgaugcccuGCACCUuGCUCAGGUc -3'
miRNA:   3'- aCAGUUCGGu--------CGUGGGcCGAGUUCGc -5'
23400 5' -57.3 NC_005259.1 + 67405 0.68 0.539046
Target:  5'- gUGUCAcgGGCCgacaccaucggGGUGCCgGGCUCAcgcuugAGCGc -3'
miRNA:   3'- -ACAGU--UCGG-----------UCGUGGgCCGAGU------UCGC- -5'
23400 5' -57.3 NC_005259.1 + 58592 0.68 0.528588
Target:  5'- cUGcCGGGCCggaucuuuucgAGCGCCUGGCUgAugucGGCGa -3'
miRNA:   3'- -ACaGUUCGG-----------UCGUGGGCCGAgU----UCGC- -5'
23400 5' -57.3 NC_005259.1 + 47249 0.68 0.50688
Target:  5'- cGUCGA-CCAGCGCUCGGUgacgcguUCcAGCGc -3'
miRNA:   3'- aCAGUUcGGUCGUGGGCCG-------AGuUCGC- -5'
23400 5' -57.3 NC_005259.1 + 52400 0.68 0.497692
Target:  5'- -cUCGGGCCaucgaggugugGGCGCUCGaCUCGGGCGg -3'
miRNA:   3'- acAGUUCGG-----------UCGUGGGCcGAGUUCGC- -5'
23400 5' -57.3 NC_005259.1 + 952 0.68 0.497692
Target:  5'- aGUCGGGCagcucGCGCaaCGGCUCAacGGCGa -3'
miRNA:   3'- aCAGUUCGgu---CGUGg-GCCGAGU--UCGC- -5'
23400 5' -57.3 NC_005259.1 + 50394 0.68 0.496676
Target:  5'- gUGUCGcggcucGCCgAGCGCgccggugccuugaCCGGCUCGGGCa -3'
miRNA:   3'- -ACAGUu-----CGG-UCGUG-------------GGCCGAGUUCGc -5'
23400 5' -57.3 NC_005259.1 + 59105 0.69 0.467632
Target:  5'- cGUUGAuGUCAGCACgCgCGGCaUCGAGCa -3'
miRNA:   3'- aCAGUU-CGGUCGUG-G-GCCG-AGUUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.