miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23401 3' -59.5 NC_005259.1 + 50721 0.66 0.551886
Target:  5'- cGGGUGCuggcuugacacAGCGCuuccucaaGCCGCCaCGCGgugucggaCGACa -3'
miRNA:   3'- -UCCACG-----------UCGCG--------UGGCGG-GUGUa-------GCUG- -5'
23401 3' -59.5 NC_005259.1 + 17414 0.66 0.551886
Target:  5'- gAGGUucuacgaGGcCGCACUGCCCgaggACAUUGGCa -3'
miRNA:   3'- -UCCAcg-----UC-GCGUGGCGGG----UGUAGCUG- -5'
23401 3' -59.5 NC_005259.1 + 44733 0.66 0.549806
Target:  5'- ---gGCAGCGCGCCcucgaccgcgccgagGCucuugagcaccgaucCCGCAUCGGCg -3'
miRNA:   3'- uccaCGUCGCGUGG---------------CG---------------GGUGUAGCUG- -5'
23401 3' -59.5 NC_005259.1 + 52776 0.66 0.541513
Target:  5'- cGGUgucgGCAGCGUguGCCGUCgACAgcacacCGACg -3'
miRNA:   3'- uCCA----CGUCGCG--UGGCGGgUGUa-----GCUG- -5'
23401 3' -59.5 NC_005259.1 + 39860 0.66 0.541513
Target:  5'- cGGUG-AGCuucucauagaGCugCGCCCACAcCGAa -3'
miRNA:   3'- uCCACgUCG----------CGugGCGGGUGUaGCUg -5'
23401 3' -59.5 NC_005259.1 + 50110 0.66 0.541513
Target:  5'- gAGGUugcccguacGCAcGgGCACCGCCaCACG-CGAUu -3'
miRNA:   3'- -UCCA---------CGU-CgCGUGGCGG-GUGUaGCUG- -5'
23401 3' -59.5 NC_005259.1 + 52461 0.66 0.541513
Target:  5'- cGGaugGCAGaC-CACCGCCCGCgaauacGUCGAg -3'
miRNA:   3'- uCCa--CGUC-GcGUGGCGGGUG------UAGCUg -5'
23401 3' -59.5 NC_005259.1 + 18008 0.66 0.531205
Target:  5'- gAGGU-CAaCGCACCGCUgCACAUCugGACu -3'
miRNA:   3'- -UCCAcGUcGCGUGGCGG-GUGUAG--CUG- -5'
23401 3' -59.5 NC_005259.1 + 14046 0.66 0.531205
Target:  5'- ---gGCAGCGCAUCGUCgGCGaCGAg -3'
miRNA:   3'- uccaCGUCGCGUGGCGGgUGUaGCUg -5'
23401 3' -59.5 NC_005259.1 + 37352 0.66 0.530178
Target:  5'- uGGGUugccgcugugcgaGUAGCucacgcccucgGCACCGCCCGCcgCGcCg -3'
miRNA:   3'- -UCCA-------------CGUCG-----------CGUGGCGGGUGuaGCuG- -5'
23401 3' -59.5 NC_005259.1 + 43265 0.66 0.530178
Target:  5'- cGGGUGCcugAGaguugacCGCAgCGCCCGCcgcCGACg -3'
miRNA:   3'- -UCCACG---UC-------GCGUgGCGGGUGua-GCUG- -5'
23401 3' -59.5 NC_005259.1 + 46330 0.66 0.528127
Target:  5'- aGGGUcGCGucGCGCACCGCuuguagguucugggCCGCGaUGGCa -3'
miRNA:   3'- -UCCA-CGU--CGCGUGGCG--------------GGUGUaGCUG- -5'
23401 3' -59.5 NC_005259.1 + 8554 0.66 0.528127
Target:  5'- cGGUGUAGCccauGCgccgcagcaccgccACCGCCCACGcacgaucCGGCg -3'
miRNA:   3'- uCCACGUCG----CG--------------UGGCGGGUGUa------GCUG- -5'
23401 3' -59.5 NC_005259.1 + 12563 0.66 0.52097
Target:  5'- gGGGUGgccCGCcagauccauGCCGCCCcacGCGUCGACc -3'
miRNA:   3'- -UCCACgucGCG---------UGGCGGG---UGUAGCUG- -5'
23401 3' -59.5 NC_005259.1 + 31244 0.66 0.52097
Target:  5'- uGGGcGCGGCgGUGCCGCcCCACA-CGcCg -3'
miRNA:   3'- -UCCaCGUCG-CGUGGCG-GGUGUaGCuG- -5'
23401 3' -59.5 NC_005259.1 + 1354 0.66 0.52097
Target:  5'- cGGUGCcuacugGGCcgcucgccGCGCCGCCCGCga-GGCc -3'
miRNA:   3'- uCCACG------UCG--------CGUGGCGGGUGuagCUG- -5'
23401 3' -59.5 NC_005259.1 + 66007 0.66 0.517914
Target:  5'- -cGUGguGCGCACCcucgggGCCgCACGuguugcgcgcgagcUCGACg -3'
miRNA:   3'- ucCACguCGCGUGG------CGG-GUGU--------------AGCUG- -5'
23401 3' -59.5 NC_005259.1 + 41952 0.66 0.510812
Target:  5'- -uGUGCuGC-CGuCCGCUCGCGUUGACu -3'
miRNA:   3'- ucCACGuCGcGU-GGCGGGUGUAGCUG- -5'
23401 3' -59.5 NC_005259.1 + 7310 0.66 0.510812
Target:  5'- uGGGUGCccgAGUuCACCGCCgucgccgagUACGUCGAg -3'
miRNA:   3'- -UCCACG---UCGcGUGGCGG---------GUGUAGCUg -5'
23401 3' -59.5 NC_005259.1 + 50511 0.66 0.510812
Target:  5'- uGG-GCGGUGCGCUGCaCC---UCGACg -3'
miRNA:   3'- uCCaCGUCGCGUGGCG-GGuguAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.