miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23401 5' -53.2 NC_005259.1 + 49688 0.66 0.897738
Target:  5'- -aGUCGgccucGCGcucgcuGUCGGUGAGAuCCGGCa -3'
miRNA:   3'- agCAGU-----UGCac----UAGUCGCUCU-GGCCG- -5'
23401 5' -53.2 NC_005259.1 + 17607 0.66 0.890714
Target:  5'- gCGaUGACGUGGggCGGCGAGGaCGGUu -3'
miRNA:   3'- aGCaGUUGCACUa-GUCGCUCUgGCCG- -5'
23401 5' -53.2 NC_005259.1 + 65112 0.66 0.890714
Target:  5'- -gGUCAguGCGUcaccGUCGGCGc-ACCGGCg -3'
miRNA:   3'- agCAGU--UGCAc---UAGUCGCucUGGCCG- -5'
23401 5' -53.2 NC_005259.1 + 47467 0.66 0.889997
Target:  5'- -gGUCAGCcaccgagGUGAUCGcgucacCGAGGCgCGGCa -3'
miRNA:   3'- agCAGUUG-------CACUAGUc-----GCUCUG-GCCG- -5'
23401 5' -53.2 NC_005259.1 + 49386 0.66 0.871264
Target:  5'- aUCGUUcuugacgccgagcgaGACGUacuugcucGAUgcCAGCGAGAaaCCGGCg -3'
miRNA:   3'- -AGCAG---------------UUGCA--------CUA--GUCGCUCU--GGCCG- -5'
23401 5' -53.2 NC_005259.1 + 66930 0.66 0.868124
Target:  5'- gUGcUCGACcggGGUgAGCGGGAcaCCGGCg -3'
miRNA:   3'- aGC-AGUUGca-CUAgUCGCUCU--GGCCG- -5'
23401 5' -53.2 NC_005259.1 + 58980 0.67 0.860107
Target:  5'- cUCGUCGGCGa---CGGCGAGcUUGGCc -3'
miRNA:   3'- -AGCAGUUGCacuaGUCGCUCuGGCCG- -5'
23401 5' -53.2 NC_005259.1 + 61008 0.67 0.852692
Target:  5'- cCGUCGACgGUGAgcuuccacucgguggCGGCGAggucgaccGACgGGCg -3'
miRNA:   3'- aGCAGUUG-CACUa--------------GUCGCU--------CUGgCCG- -5'
23401 5' -53.2 NC_005259.1 + 17742 0.67 0.851857
Target:  5'- cUGcUCGACGcGAUCcGUGAGGCCGccGCg -3'
miRNA:   3'- aGC-AGUUGCaCUAGuCGCUCUGGC--CG- -5'
23401 5' -53.2 NC_005259.1 + 4343 0.67 0.843383
Target:  5'- cUCGUCGcgGUGAUgAGCGccGGA-CGGCa -3'
miRNA:   3'- -AGCAGUugCACUAgUCGC--UCUgGCCG- -5'
23401 5' -53.2 NC_005259.1 + 31054 0.67 0.83557
Target:  5'- gCGUCGACcacauaguugaucgGGUCGGCGAGGuucCCGaGCg -3'
miRNA:   3'- aGCAGUUGca------------CUAGUCGCUCU---GGC-CG- -5'
23401 5' -53.2 NC_005259.1 + 47630 0.67 0.834691
Target:  5'- gUCGUCGcCGaGggCAGCGAGGCCc-- -3'
miRNA:   3'- -AGCAGUuGCaCuaGUCGCUCUGGccg -5'
23401 5' -53.2 NC_005259.1 + 6447 0.67 0.825792
Target:  5'- cCGUC-GCGcUGAUCggcAGCGucGCCGGUg -3'
miRNA:   3'- aGCAGuUGC-ACUAG---UCGCucUGGCCG- -5'
23401 5' -53.2 NC_005259.1 + 7154 0.68 0.817612
Target:  5'- cUCGUCAAgGUcGAggaccacgagggcacCGGCGAGugcCCGGCc -3'
miRNA:   3'- -AGCAGUUgCA-CUa--------------GUCGCUCu--GGCCG- -5'
23401 5' -53.2 NC_005259.1 + 11299 0.68 0.816694
Target:  5'- -gGUCGacggGCGUGA--GGcCGAGACgGGCg -3'
miRNA:   3'- agCAGU----UGCACUagUC-GCUCUGgCCG- -5'
23401 5' -53.2 NC_005259.1 + 9760 0.68 0.797939
Target:  5'- ---aCAGCGUGAUa--CGAGACCuGGCu -3'
miRNA:   3'- agcaGUUGCACUAgucGCUCUGG-CCG- -5'
23401 5' -53.2 NC_005259.1 + 43950 0.68 0.797939
Target:  5'- gCGUCGGC--GAUgGGCGGGGCCGccGCc -3'
miRNA:   3'- aGCAGUUGcaCUAgUCGCUCUGGC--CG- -5'
23401 5' -53.2 NC_005259.1 + 49566 0.68 0.797939
Target:  5'- uUCGUCGGuCGU----GGCcAGACCGGCg -3'
miRNA:   3'- -AGCAGUU-GCAcuagUCGcUCUGGCCG- -5'
23401 5' -53.2 NC_005259.1 + 17783 0.68 0.788303
Target:  5'- gCG-CAccgaGCGUGcgCaccgcgauAGCGAGGCCGGUg -3'
miRNA:   3'- aGCaGU----UGCACuaG--------UCGCUCUGGCCG- -5'
23401 5' -53.2 NC_005259.1 + 17342 0.68 0.778508
Target:  5'- -gGUCAACGUcgccgucgaGGUCGGCG-GcUCGGCg -3'
miRNA:   3'- agCAGUUGCA---------CUAGUCGCuCuGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.