Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23403 | 3' | -51.2 | NC_005259.1 | + | 42931 | 0.7 | 0.789677 |
Target: 5'- aGCAUgaggCccuCGCcGugGGCGAGGCCGc -3' miRNA: 3'- gUGUAa---Guu-GCGuCugCCGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 43789 | 0.66 | 0.927094 |
Target: 5'- gGCAUgagCAGCGCGGGCaccgaguccuugccgGGCGuaccgccggacacaGGGCCGc -3' miRNA: 3'- gUGUAa--GUUGCGUCUG---------------CCGU--------------UCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 49724 | 0.7 | 0.759141 |
Target: 5'- gAUAUUCG--GCGGGCGGCGAGAgCu -3' miRNA: 3'- gUGUAAGUugCGUCUGCCGUUCUgGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 52157 | 0.71 | 0.694786 |
Target: 5'- gGCAggCAGCGCcgAGGCGcucaugcaGCAGGACCGc -3' miRNA: 3'- gUGUaaGUUGCG--UCUGC--------CGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 52452 | 0.67 | 0.900982 |
Target: 5'- gAUGUUCG--GCGGAUGGC-AGACCa -3' miRNA: 3'- gUGUAAGUugCGUCUGCCGuUCUGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 54666 | 0.71 | 0.694786 |
Target: 5'- uGCAUUCcuGCGUAugcucGGCGaGCGAGACCGu -3' miRNA: 3'- gUGUAAGu-UGCGU-----CUGC-CGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 57452 | 0.66 | 0.926513 |
Target: 5'- gUugGUgCGACGCu-GCGGCA-GGCCGg -3' miRNA: 3'- -GugUAaGUUGCGucUGCCGUuCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 59302 | 0.66 | 0.94269 |
Target: 5'- aCGCugUCGugGCGGcaGCGGCGAGcucaGCCu -3' miRNA: 3'- -GUGuaAGUugCGUC--UGCCGUUC----UGGc -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 64018 | 0.68 | 0.854531 |
Target: 5'- cCGCGccCGAgGC--GCGGCGAGGCCGg -3' miRNA: 3'- -GUGUaaGUUgCGucUGCCGUUCUGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 65122 | 0.67 | 0.914311 |
Target: 5'- uCACcgUCGGCGCAccGGCGGCcacccCCGa -3' miRNA: 3'- -GUGuaAGUUGCGU--CUGCCGuucu-GGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 66243 | 0.69 | 0.837057 |
Target: 5'- uGCAgccaUCGACGCAGcGCGGCccgcGCCGg -3' miRNA: 3'- gUGUa---AGUUGCGUC-UGCCGuuc-UGGC- -5' |
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23403 | 3' | -51.2 | NC_005259.1 | + | 67155 | 0.66 | 0.926513 |
Target: 5'- cCGCuugUCGAUGguGGCGGCcauGCCGc -3' miRNA: 3'- -GUGua-AGUUGCguCUGCCGuucUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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