Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 23403 | 5' | -59.2 | NC_005259.1 | + | 36662 | 0.7 | 0.297159 |
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Target: 5'- cGCcGCcCUCGCCGCcgCCGCCGGGg-- -3' miRNA: 3'- uCGuCGaGAGCGGCG--GGCGGCUUaua -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 36995 | 0.7 | 0.304456 |
|
Target: 5'- cGCAccGUUCUUGCCcgcgcGCCCGCCGGGg-- -3' miRNA: 3'- uCGU--CGAGAGCGG-----CGGGCGGCUUaua -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 49092 | 0.7 | 0.311891 |
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Target: 5'- aGGguGUcaUgGCCGCCCGCCGGGa-- -3' miRNA: 3'- -UCguCGagAgCGGCGGGCGGCUUaua -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 5537 | 0.7 | 0.319462 |
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Target: 5'- uGGCuGCUCUCGCCcgagGCCgCGUgGggUGg -3' miRNA: 3'- -UCGuCGAGAGCGG----CGG-GCGgCuuAUa -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 3275 | 0.7 | 0.32717 |
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Target: 5'- gGGUGGUUUcccgUCGCCGCCuCGCCGGu--- -3' miRNA: 3'- -UCGUCGAG----AGCGGCGG-GCGGCUuaua -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 13544 | 0.72 | 0.243638 |
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Target: 5'- aAGCAGUUCgcgaUGUgGCCCGCCGAc--- -3' miRNA: 3'- -UCGUCGAGa---GCGgCGGGCGGCUuaua -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 1365 | 0.72 | 0.237542 |
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Target: 5'- gGGCcGCUCgccgCGCCGCCCG-CGAGg-- -3' miRNA: 3'- -UCGuCGAGa---GCGGCGGGCgGCUUaua -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 53461 | 0.73 | 0.203609 |
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Target: 5'- cGGCGGCUggCUCGUCguccgGCCCGCCGuAGUAg -3' miRNA: 3'- -UCGUCGA--GAGCGG-----CGGGCGGC-UUAUa -5' |
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| 23403 | 5' | -59.2 | NC_005259.1 | + | 26498 | 0.74 | 0.160627 |
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Target: 5'- cGCcGCgagCUCGCCGCCCGgCGAGa-- -3' miRNA: 3'- uCGuCGa--GAGCGGCGGGCgGCUUaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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