miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23404 5' -65.1 NC_005259.1 + 66637 0.67 0.260121
Target:  5'- cUGGCCaCCGCUCggauugcuGCCGGUCggcgGuGCUGCGa -3'
miRNA:   3'- -ACUGG-GGCGGG--------CGGCCAGa---C-CGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 2229 0.68 0.256462
Target:  5'- cGGCCUCGCCauuugucggcgacaGCCGGUacGGCgACGa -3'
miRNA:   3'- aCUGGGGCGGg-------------CGGCCAgaCCGgUGC- -5'
23404 5' -65.1 NC_005259.1 + 65164 0.68 0.254046
Target:  5'- gGGCCaUgGCCCGCCGGgucaaggcgCUGGUCGa- -3'
miRNA:   3'- aCUGG-GgCGGGCGGCCa--------GACCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 34221 0.68 0.242245
Target:  5'- aUGuCCCCgGCgCUGCCGGUCUuGCCGu- -3'
miRNA:   3'- -ACuGGGG-CG-GGCGGCCAGAcCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 38671 0.68 0.242245
Target:  5'- -cACCUCGCuguuggCCGCCGGgucgaggUUGGCCACc -3'
miRNA:   3'- acUGGGGCG------GGCGGCCa------GACCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 37647 0.68 0.242245
Target:  5'- aUGACCgcaCCGCCgccgcCGCCGGUgccGCCACGg -3'
miRNA:   3'- -ACUGG---GGCGG-----GCGGCCAgacCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 1614 0.68 0.242245
Target:  5'- uUGGCCCuCGUCuCGUCGcuaCUGGCCAUGc -3'
miRNA:   3'- -ACUGGG-GCGG-GCGGCca-GACCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 55890 0.68 0.242245
Target:  5'- cGACCUCggggGUCgCGCCGGggucgCUGGCCAg- -3'
miRNA:   3'- aCUGGGG----CGG-GCGGCCa----GACCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 20721 0.68 0.230904
Target:  5'- -cACCCCGCCgCGCgaaaugacguauUGGUCcGGCCAUc -3'
miRNA:   3'- acUGGGGCGG-GCG------------GCCAGaCCGGUGc -5'
23404 5' -65.1 NC_005259.1 + 22618 0.68 0.22759
Target:  5'- cGACCgCCGCCCgaucaucuucgccgcGUCGGUCgacGCCGCc -3'
miRNA:   3'- aCUGG-GGCGGG---------------CGGCCAGac-CGGUGc -5'
23404 5' -65.1 NC_005259.1 + 57811 0.68 0.220014
Target:  5'- cGACgCCGCCCGCaCGca-UGGCCAg- -3'
miRNA:   3'- aCUGgGGCGGGCG-GCcagACCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 9819 0.68 0.220014
Target:  5'- ---gCCCGCaCCGCCGGgugcggcgCUGGCCcaauCGa -3'
miRNA:   3'- acugGGGCG-GGCGGCCa-------GACCGGu---GC- -5'
23404 5' -65.1 NC_005259.1 + 10051 0.68 0.220014
Target:  5'- aGACCCCGaCacaCGCCGGUUUGcccucgcaggacGCCgACGa -3'
miRNA:   3'- aCUGGGGC-Gg--GCGGCCAGAC------------CGG-UGC- -5'
23404 5' -65.1 NC_005259.1 + 8244 0.68 0.220014
Target:  5'- -cACCCUGCCUuaCCGGUCUuGGgCGCGa -3'
miRNA:   3'- acUGGGGCGGGc-GGCCAGA-CCgGUGC- -5'
23404 5' -65.1 NC_005259.1 + 27940 0.69 0.216834
Target:  5'- cGACCCaGCUCGCCGGUgaacggaucugucagCgUGGCCAa- -3'
miRNA:   3'- aCUGGGgCGGGCGGCCA---------------G-ACCGGUgc -5'
23404 5' -65.1 NC_005259.1 + 8142 0.69 0.214736
Target:  5'- -uGCCCCGCgcccUCGuuGcUCUGGCCAUGg -3'
miRNA:   3'- acUGGGGCG----GGCggCcAGACCGGUGC- -5'
23404 5' -65.1 NC_005259.1 + 65793 0.69 0.214214
Target:  5'- aUGGCCUCGaCgCGCUGGUCgaaacgcUGGCCGuCGa -3'
miRNA:   3'- -ACUGGGGC-GgGCGGCCAG-------ACCGGU-GC- -5'
23404 5' -65.1 NC_005259.1 + 26604 0.69 0.213173
Target:  5'- uUGAUCCaCGCCgCGCCGGaccgguagccgauaUCgaUGGCCugGc -3'
miRNA:   3'- -ACUGGG-GCGG-GCGGCC--------------AG--ACCGGugC- -5'
23404 5' -65.1 NC_005259.1 + 15069 0.69 0.209566
Target:  5'- gUGGCCaCCcugGCCCuugaGCCGGUCaUGcGCCGCa -3'
miRNA:   3'- -ACUGG-GG---CGGG----CGGCCAG-AC-CGGUGc -5'
23404 5' -65.1 NC_005259.1 + 12218 0.69 0.209566
Target:  5'- cGGCgCaCCGCCCGCUGGccgggcaaUGGUCACa -3'
miRNA:   3'- aCUG-G-GGCGGGCGGCCag------ACCGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.