miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23405 5' -58 NC_005259.1 + 68311 0.66 0.668833
Target:  5'- gCGCGuCCggcGAcgGGAUCUCGAUGAUGg- -3'
miRNA:   3'- -GCGC-GGa--CUa-CCUGGGGCUGCUACag -5'
23405 5' -58 NC_005259.1 + 3916 0.66 0.647699
Target:  5'- cCGUaCCUGA---ACCCCGGCGAgaccgUGUCg -3'
miRNA:   3'- -GCGcGGACUaccUGGGGCUGCU-----ACAG- -5'
23405 5' -58 NC_005259.1 + 27365 0.66 0.637108
Target:  5'- uCGgGCUUGGUGcccggcacgguGACCggCGGCGGUGUCg -3'
miRNA:   3'- -GCgCGGACUAC-----------CUGGg-GCUGCUACAG- -5'
23405 5' -58 NC_005259.1 + 31738 0.66 0.626512
Target:  5'- cCGCGCCUGccgcgagcgcUGGuguccccaccGCCCCGucauCGAUGUg -3'
miRNA:   3'- -GCGCGGACu---------ACC----------UGGGGCu---GCUACAg -5'
23405 5' -58 NC_005259.1 + 3148 0.66 0.626512
Target:  5'- cCGC-CCgug-GGACuacacggugaugCCCGGCGAUGUCa -3'
miRNA:   3'- -GCGcGGacuaCCUG------------GGGCUGCUACAG- -5'
23405 5' -58 NC_005259.1 + 48500 0.66 0.626512
Target:  5'- aCGCGCUUGA-GGGCCgCGACu-UGcCg -3'
miRNA:   3'- -GCGCGGACUaCCUGGgGCUGcuACaG- -5'
23405 5' -58 NC_005259.1 + 13461 0.66 0.625452
Target:  5'- gCGCgGCgCUGGUGcucACcgcgcugCCCGACGAUGUCu -3'
miRNA:   3'- -GCG-CG-GACUACc--UG-------GGGCUGCUACAG- -5'
23405 5' -58 NC_005259.1 + 43445 0.66 0.615921
Target:  5'- uGCGCUcGAUGaGA-CCCGA-GGUGUCg -3'
miRNA:   3'- gCGCGGaCUAC-CUgGGGCUgCUACAG- -5'
23405 5' -58 NC_005259.1 + 47912 0.67 0.605343
Target:  5'- aGCGCCuUGAUGGcgucgccgagGCCCUGGaagcCGAUGa- -3'
miRNA:   3'- gCGCGG-ACUACC----------UGGGGCU----GCUACag -5'
23405 5' -58 NC_005259.1 + 61148 0.67 0.552928
Target:  5'- cCGUGCCgacucaaGGACaCCGACGGUGUa -3'
miRNA:   3'- -GCGCGGacua---CCUGgGGCUGCUACAg -5'
23405 5' -58 NC_005259.1 + 18264 0.67 0.552928
Target:  5'- cCGCGCCUGAaccUGaGACgaccucgacgCCCGACGAg--- -3'
miRNA:   3'- -GCGCGGACU---AC-CUG----------GGGCUGCUacag -5'
23405 5' -58 NC_005259.1 + 64828 0.68 0.53232
Target:  5'- aGCGUgUGGUgacGGACCCUgcuGGCGAUGg- -3'
miRNA:   3'- gCGCGgACUA---CCUGGGG---CUGCUACag -5'
23405 5' -58 NC_005259.1 + 67366 0.68 0.489028
Target:  5'- uCGCGCCgGAucuUGGggaaauuacgcuugGCCUCGGgGGUGUCa -3'
miRNA:   3'- -GCGCGGaCU---ACC--------------UGGGGCUgCUACAG- -5'
23405 5' -58 NC_005259.1 + 48075 0.69 0.462702
Target:  5'- cCGCGCCcugagcgaUGGUGuuGAgCCCGACGGguccgGUCa -3'
miRNA:   3'- -GCGCGG--------ACUAC--CUgGGGCUGCUa----CAG- -5'
23405 5' -58 NC_005259.1 + 44429 0.69 0.462702
Target:  5'- aGCGCC-GAUaccGGCCCCGAaGAUGUUc -3'
miRNA:   3'- gCGCGGaCUAc--CUGGGGCUgCUACAG- -5'
23405 5' -58 NC_005259.1 + 41404 0.69 0.462702
Target:  5'- gCGCGCCgcucggGGugCCC-ACGAUGUg -3'
miRNA:   3'- -GCGCGGacua--CCugGGGcUGCUACAg -5'
23405 5' -58 NC_005259.1 + 21955 0.7 0.416017
Target:  5'- gGCGCaaGgcGuGACCCgCGugGGUGUCg -3'
miRNA:   3'- gCGCGgaCuaC-CUGGG-GCugCUACAG- -5'
23405 5' -58 NC_005259.1 + 47569 0.71 0.363974
Target:  5'- uCGCGCgCUGcUGucCCUCGGCGGUGUUg -3'
miRNA:   3'- -GCGCG-GACuACcuGGGGCUGCUACAG- -5'
23405 5' -58 NC_005259.1 + 6410 0.72 0.309188
Target:  5'- gGUGcCCUGAUGuggcccGACCUCGcCGAUGUCg -3'
miRNA:   3'- gCGC-GGACUAC------CUGGGGCuGCUACAG- -5'
23405 5' -58 NC_005259.1 + 34476 0.74 0.236197
Target:  5'- aGCaGCUUGGUGGuguCCCCcgccgacgcgacGACGAUGUCg -3'
miRNA:   3'- gCG-CGGACUACCu--GGGG------------CUGCUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.