miRNA display CGI


Results 21 - 40 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23406 5' -52.8 NC_005259.1 + 55482 0.67 0.845338
Target:  5'- -cGCGUAGaugaGCGCGaACAccagcgucACGAGGCCc -3'
miRNA:   3'- ucUGCGUCg---CGCGCaUGU--------UGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 46391 0.67 0.836588
Target:  5'- -cACGCAGcCGCGCGgugaggGCAuCGAaACCg -3'
miRNA:   3'- ucUGCGUC-GCGCGCa-----UGUuGUUcUGG- -5'
23406 5' -52.8 NC_005259.1 + 35662 0.67 0.836588
Target:  5'- gGGugGcCAGCGCG-GUgguggugcACAGCGAcGCCg -3'
miRNA:   3'- -UCugC-GUCGCGCgCA--------UGUUGUUcUGG- -5'
23406 5' -52.8 NC_005259.1 + 23134 0.67 0.836588
Target:  5'- ---gGCAGCGauguGaCGUGguGCGAGACCa -3'
miRNA:   3'- ucugCGUCGCg---C-GCAUguUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 60540 0.67 0.827622
Target:  5'- gGGACGCAGcCGCuCGU-CGGCAuGcCCg -3'
miRNA:   3'- -UCUGCGUC-GCGcGCAuGUUGUuCuGG- -5'
23406 5' -52.8 NC_005259.1 + 49634 0.67 0.827622
Target:  5'- cGGCgGCAGC-CGCGUcgGCGAUGGcGGCCu -3'
miRNA:   3'- uCUG-CGUCGcGCGCA--UGUUGUU-CUGG- -5'
23406 5' -52.8 NC_005259.1 + 18295 0.67 0.822144
Target:  5'- cGACGagccgccguucugccCGGUGUGCG-ACAcCGAGGCCg -3'
miRNA:   3'- uCUGC---------------GUCGCGCGCaUGUuGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 8659 0.67 0.818452
Target:  5'- uGugGUcgGGCugccaCGCGgGCAACGGGGCCg -3'
miRNA:   3'- uCugCG--UCGc----GCGCaUGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 49581 0.67 0.818452
Target:  5'- cAGAC-CGGCGgGCGggguCAGCAccucGACCu -3'
miRNA:   3'- -UCUGcGUCGCgCGCau--GUUGUu---CUGG- -5'
23406 5' -52.8 NC_005259.1 + 68303 0.68 0.809084
Target:  5'- gGGAUcgGGCGCGUccgGCGACGGGAUCu -3'
miRNA:   3'- -UCUGcgUCGCGCGca-UGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 21038 0.68 0.809084
Target:  5'- uGAC-CGGCGCGCGUuCAAgGucGCCg -3'
miRNA:   3'- uCUGcGUCGCGCGCAuGUUgUucUGG- -5'
23406 5' -52.8 NC_005259.1 + 18794 0.68 0.809084
Target:  5'- cGGugGCAGgGaCGCc-GCAcccuCAAGACCa -3'
miRNA:   3'- -UCugCGUCgC-GCGcaUGUu---GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 44243 0.68 0.789804
Target:  5'- -cGCGCcgcccGCGCGCGagaagucgGCGACAucgAGGCCg -3'
miRNA:   3'- ucUGCGu----CGCGCGCa-------UGUUGU---UCUGG- -5'
23406 5' -52.8 NC_005259.1 + 60242 0.68 0.789804
Target:  5'- uGGcACGCuuGCGUGCGggu-GCAAGGCUg -3'
miRNA:   3'- -UC-UGCGu-CGCGCGCauguUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 64259 0.68 0.776914
Target:  5'- -aACGUGGUGCGCGaGCAcgaguucgcgcgccACGAGACg -3'
miRNA:   3'- ucUGCGUCGCGCGCaUGU--------------UGUUCUGg -5'
23406 5' -52.8 NC_005259.1 + 64616 0.68 0.769867
Target:  5'- cGGCG-AGCGCGaCGgGCAGCAGcGCCc -3'
miRNA:   3'- uCUGCgUCGCGC-GCaUGUUGUUcUGG- -5'
23406 5' -52.8 NC_005259.1 + 51269 0.68 0.769867
Target:  5'- cGGugGUcacGGUGCGCGgcaaGCGGCAGcGCCc -3'
miRNA:   3'- -UCugCG---UCGCGCGCa---UGUUGUUcUGG- -5'
23406 5' -52.8 NC_005259.1 + 61735 0.68 0.769867
Target:  5'- cGA-GCAGgUGUGCGUcCGGCGAGAUCu -3'
miRNA:   3'- uCUgCGUC-GCGCGCAuGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 26410 0.69 0.763771
Target:  5'- cGGGCGCGGCGgugcCGcCGUAgAACGcaccgccgagcgggcGGGCCg -3'
miRNA:   3'- -UCUGCGUCGC----GC-GCAUgUUGU---------------UCUGG- -5'
23406 5' -52.8 NC_005259.1 + 2530 0.69 0.759679
Target:  5'- cGACGCcaccGCGCGCaUugGACA-GAUCg -3'
miRNA:   3'- uCUGCGu---CGCGCGcAugUUGUuCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.