miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23407 3' -54.1 NC_005259.1 + 3010 0.71 0.566921
Target:  5'- cCGACGCCAUCAccccaGCGCUCcAUGAc- -3'
miRNA:   3'- -GCUGCGGUAGUuc---CGCGAGuUGCUcc -5'
23407 3' -54.1 NC_005259.1 + 29357 0.71 0.556279
Target:  5'- aGAcCGCCGUCGAGGCaCcCGuCGAGGu -3'
miRNA:   3'- gCU-GCGGUAGUUCCGcGaGUuGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 5234 0.72 0.524732
Target:  5'- cCGACGCUgagAUCGAuGUgugGCUCGGCGGGGa -3'
miRNA:   3'- -GCUGCGG---UAGUUcCG---CGAGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 35689 0.72 0.535177
Target:  5'- gCGACGCCGUgcccggCGAGGgguCGCU-GACGAGGu -3'
miRNA:   3'- -GCUGCGGUA------GUUCC---GCGAgUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 52401 0.73 0.444446
Target:  5'- uCGG-GCCAUCGagguguGGGCGCUCGACucGGg -3'
miRNA:   3'- -GCUgCGGUAGU------UCCGCGAGUUGcuCC- -5'
23407 3' -54.1 NC_005259.1 + 19715 0.73 0.444446
Target:  5'- uGGCuGCCGcCGAGGUGaUCGACGGGGa -3'
miRNA:   3'- gCUG-CGGUaGUUCCGCgAGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 36019 0.74 0.397903
Target:  5'- gGugGCCAgCGAGGuCGacaugaUCAGCGAGGc -3'
miRNA:   3'- gCugCGGUaGUUCC-GCg-----AGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 20849 0.75 0.371521
Target:  5'- cCGACGCCugCAAGGUGUUCGACGcgaucaagcAGGu -3'
miRNA:   3'- -GCUGCGGuaGUUCCGCGAGUUGC---------UCC- -5'
23407 3' -54.1 NC_005259.1 + 22776 0.75 0.354608
Target:  5'- aGGCGCUgGUCAcugugcAGGUGCUCAcCGAGGg -3'
miRNA:   3'- gCUGCGG-UAGU------UCCGCGAGUuGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 17347 0.75 0.346357
Target:  5'- aCGuCGCCGUCGAGGUcggcgGCUCGGCGcuGGu -3'
miRNA:   3'- -GCuGCGGUAGUUCCG-----CGAGUUGCu-CC- -5'
23407 3' -54.1 NC_005259.1 + 23492 0.8 0.184283
Target:  5'- cCGACGCCAUgacCAAGGCcgaGCUCAGCGAc- -3'
miRNA:   3'- -GCUGCGGUA---GUUCCG---CGAGUUGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.