miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23407 3' -54.1 NC_005259.1 + 41479 0.69 0.685522
Target:  5'- uGACGCCGUCGAGcaCGacCUCGGCGGuGGc -3'
miRNA:   3'- gCUGCGGUAGUUCc-GC--GAGUUGCU-CC- -5'
23407 3' -54.1 NC_005259.1 + 32223 0.69 0.685522
Target:  5'- cCGACGCCucggcacCGAGcUGCUCGAUGAGa -3'
miRNA:   3'- -GCUGCGGua-----GUUCcGCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 64019 0.69 0.674789
Target:  5'- -cGCGCC--CGAGGCGCg--GCGAGGc -3'
miRNA:   3'- gcUGCGGuaGUUCCGCGaguUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 61495 0.69 0.674789
Target:  5'- -cGCGaCCGUUGAGGCGCUCggUGugccGGu -3'
miRNA:   3'- gcUGC-GGUAGUUCCGCGAGuuGCu---CC- -5'
23407 3' -54.1 NC_005259.1 + 27529 0.69 0.674789
Target:  5'- -cACGCCGUCGAGGCcccaCGGCGGGa -3'
miRNA:   3'- gcUGCGGUAGUUCCGcga-GUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 48424 0.69 0.674789
Target:  5'- gCGAcCGCCAccacCGAGGCGCgaggCAGCGGc- -3'
miRNA:   3'- -GCU-GCGGUa---GUUCCGCGa---GUUGCUcc -5'
23407 3' -54.1 NC_005259.1 + 41640 0.69 0.664018
Target:  5'- gCGGUGCCgGUCugcGGGCGCUCggUGAGcGg -3'
miRNA:   3'- -GCUGCGG-UAGu--UCCGCGAGuuGCUC-C- -5'
23407 3' -54.1 NC_005259.1 + 17801 0.68 0.7687
Target:  5'- --cCGCgAUagCGAGGCcggugaGCUCAGCGAGGc -3'
miRNA:   3'- gcuGCGgUA--GUUCCG------CGAGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 22701 0.68 0.758665
Target:  5'- cCGuCGCCGUCAccG-GCUCGAUGAGc -3'
miRNA:   3'- -GCuGCGGUAGUucCgCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 46656 0.68 0.758665
Target:  5'- aCGGCuGCgGUUGAGGUuCUCGGCGAGc -3'
miRNA:   3'- -GCUG-CGgUAGUUCCGcGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 64342 0.68 0.73823
Target:  5'- gGACuGCCAcUCGuugcGGGCGgugcccaUCAGCGAGGu -3'
miRNA:   3'- gCUG-CGGU-AGU----UCCGCg------AGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 16646 0.68 0.73823
Target:  5'- gCGACGCCGccgacaauuUCGGGGUGaccgcCUCGAUGuGGu -3'
miRNA:   3'- -GCUGCGGU---------AGUUCCGC-----GAGUUGCuCC- -5'
23407 3' -54.1 NC_005259.1 + 51775 0.68 0.73823
Target:  5'- gCGAgCGCCuugaggUAuucGGCGCUCGGCGGGu -3'
miRNA:   3'- -GCU-GCGGua----GUu--CCGCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 15569 0.68 0.73823
Target:  5'- gGugGCCAcccUCGGGGCcaGCgCGACGGGc -3'
miRNA:   3'- gCugCGGU---AGUUCCG--CGaGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 4105 0.68 0.73823
Target:  5'- uGAUGCCAaaccUCGGcGGC-CUCGACGuGGc -3'
miRNA:   3'- gCUGCGGU----AGUU-CCGcGAGUUGCuCC- -5'
23407 3' -54.1 NC_005259.1 + 24739 0.67 0.807372
Target:  5'- uGAUGCgGUguggggugcCGAGGCGCUCAuCGAa- -3'
miRNA:   3'- gCUGCGgUA---------GUUCCGCGAGUuGCUcc -5'
23407 3' -54.1 NC_005259.1 + 16601 0.67 0.807372
Target:  5'- gCGAgGCCAUCGGacUGUUCAACGGGc -3'
miRNA:   3'- -GCUgCGGUAGUUccGCGAGUUGCUCc -5'
23407 3' -54.1 NC_005259.1 + 60335 0.67 0.797945
Target:  5'- uGACGC--UCAAGGCGgcgaUCAGguCGAGGc -3'
miRNA:   3'- gCUGCGguAGUUCCGCg---AGUU--GCUCC- -5'
23407 3' -54.1 NC_005259.1 + 18924 0.67 0.797945
Target:  5'- uCGGCGaCUcgaucauccugAUCAAGGCcagCAACGAGGa -3'
miRNA:   3'- -GCUGC-GG-----------UAGUUCCGcgaGUUGCUCC- -5'
23407 3' -54.1 NC_005259.1 + 63538 0.67 0.807372
Target:  5'- gGAC-CUuuUCGAGGUGCUCGGCGGc- -3'
miRNA:   3'- gCUGcGGu-AGUUCCGCGAGUUGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.