Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23407 | 3' | -54.1 | NC_005259.1 | + | 24739 | 0.67 | 0.807372 |
Target: 5'- uGAUGCgGUguggggugcCGAGGCGCUCAuCGAa- -3' miRNA: 3'- gCUGCGgUA---------GUUCCGCGAGUuGCUcc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 16601 | 0.67 | 0.807372 |
Target: 5'- gCGAgGCCAUCGGacUGUUCAACGGGc -3' miRNA: 3'- -GCUgCGGUAGUUccGCGAGUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 67914 | 0.66 | 0.825682 |
Target: 5'- uCGGCGagGUCAAGcGCGUaggUC-GCGAGGa -3' miRNA: 3'- -GCUGCggUAGUUC-CGCG---AGuUGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 67415 | 0.66 | 0.831025 |
Target: 5'- cCGACaCCAUCGGGGUgccggGCUCAcgcuugagcgcguCGGGGa -3' miRNA: 3'- -GCUGcGGUAGUUCCG-----CGAGUu------------GCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 17583 | 0.66 | 0.83279 |
Target: 5'- cCGACGCUgccgcgCAAccucGGCGCgaugacguggggCGGCGAGGa -3' miRNA: 3'- -GCUGCGGua----GUU----CCGCGa-----------GUUGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 26876 | 0.66 | 0.843205 |
Target: 5'- gGugGCCcaGUCGAgcacaccaucGGUGUUCAucACGGGGc -3' miRNA: 3'- gCugCGG--UAGUU----------CCGCGAGU--UGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 20433 | 0.66 | 0.851648 |
Target: 5'- cCGACGCCA-CA--GUGCUCcacGACGAGc -3' miRNA: 3'- -GCUGCGGUaGUucCGCGAG---UUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 9353 | 0.66 | 0.851648 |
Target: 5'- cCGAUGaCCGUCuguAGGuCGUacUCGGCGAGc -3' miRNA: 3'- -GCUGC-GGUAGu--UCC-GCG--AGUUGCUCc -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 20474 | 0.66 | 0.857427 |
Target: 5'- uGAcCGCCGUCGAccucgacaccgcccGGCaGCUCAucgGCGAcGGu -3' miRNA: 3'- gCU-GCGGUAGUU--------------CCG-CGAGU---UGCU-CC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 18803 | 0.66 | 0.858243 |
Target: 5'- gGACGCCGcacccucaagacCAAGGUGCUguaucugccCggUGAGGg -3' miRNA: 3'- gCUGCGGUa-----------GUUCCGCGA---------GuuGCUCC- -5' |
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23407 | 3' | -54.1 | NC_005259.1 | + | 24050 | 0.66 | 0.859869 |
Target: 5'- -aACGUCGUCGGcgcGGUGCUCAaucucgugcaccGCGAGa -3' miRNA: 3'- gcUGCGGUAGUU---CCGCGAGU------------UGCUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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